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jalview.git
2019-03-22 Ben SoaresJAL-3130 adding two more modules picked up by gradle... commit | commitdiff | tree | snapshot
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ... commit | commitdiff | tree | snapshot
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... commit | commitdiff | tree | snapshot
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff | tree | snapshot
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules... commit | commitdiff | tree | snapshot
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 removing no longer needed JRE (going to use... commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 Removing accidentally committed tmp dir commit | commitdiff | tree | snapshot
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all... commit | commitdiff | tree | snapshot
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in... commit | commitdiff | tree | snapshot
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown commit | commitdiff | tree | snapshot
2019-03-12 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff | tree | snapshot
2019-03-12 gmungocJAL-3127 check for null viewport feature/JAL-3127_seqidChainshading commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test... commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-3127 fix faulty merge commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'feature/JAL-2250colourAllGroups' into... commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'bug/JAL-3075' into develop commit | commitdiff | tree | snapshot
2019-03-08 gmungocJAL-3193 defensive trim of URL read from properties... commit | commitdiff | tree | snapshot
2019-03-08 gmungocJAL-2903 typos fixed commit | commitdiff | tree | snapshot
2019-03-08 gmungocJAL-3075 update column selection on mouse up after... bug/JAL-3075 commit | commitdiff | tree | snapshot
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu... commit | commitdiff | tree | snapshot
2019-03-07 Ben SoaresJAL-3130 deprecation change preparation commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected commit | commitdiff | tree | snapshot
2019-03-07 Jim ProcterJAL-3127 set ‘updateStructures’ flag for viewports... commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-2717 JAL-2360 belated unit tests for ColourMenuHelper commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-2717 corrected i18n of colour scheme names commit | commitdiff | tree | snapshot
2019-03-07 gmungocMerge branch 'feature/JAL-3205symmetricCalc' into develop commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-3035 removed spring libraries as only used for... commit | commitdiff | tree | snapshot
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff | tree | snapshot
2019-03-06 gmungocJAL-3035 restored erroneous deletion tasks/JAL-3035_remove_dasobert_dependency commit | commitdiff | tree | snapshot
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff | tree | snapshot
2019-03-06 gmungocJAL-3035 more das bits removed commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge branch 'bug/JAL-3201groupClustal' into develop commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge branch 'bug/JAL-2621' into develop commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3141_Messa... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWi... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-914multipl... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2814f... commit | commitdiff | tree | snapshot
2019-03-05 Ben SoaresJAL-3141 Fixed inconsistent (changed) message labels... bug/JAL-3141_Messages_discrepancy_fix commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3002fastPa... commit | commitdiff | tree | snapshot
2019-03-05 gmungocJAL-3049 JAL-3032 tidy/i18n code, remove redundant... commit | commitdiff | tree | snapshot
2019-03-05 gmungocJAL-3049 redo (part of) commit 92bc328 commit | commitdiff | tree | snapshot
2019-03-05 gmungocJAL-3054 small y-overlap of tooltip and cell leads... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3049colour... commit | commitdiff | tree | snapshot
2019-03-05 gmungocJAL-3205 added a delta parameter to Matrix.equals() feature/JAL-3205symmetricCalc commit | commitdiff | tree | snapshot
2019-03-04 gmungocMerge branch 'bug/JAL-3072scrollThread' into merge... commit | commitdiff | tree | snapshot
2019-03-04 gmungocMerge remote-tracking branch 'origin/bug/JAL-3082select... commit | commitdiff | tree | snapshot
2019-03-04 gmungocJAL-3206 avoid divide by zero when threshold is graphMi... commit | commitdiff | tree | snapshot
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... commit | commitdiff | tree | snapshot
2019-03-04 gmungocMerge remote-tracking branch 'origin/tasks/JAL-3035_rem... commit | commitdiff | tree | snapshot
2019-03-04 gmungocMerge branch 'bug/JAL-3120restoreFeatureColour' into... commit | commitdiff | tree | snapshot
2019-03-04 gmungocJAL-3205 worked examples in unit test for symmetric... commit | commitdiff | tree | snapshot
2019-03-03 gmungocJAL-3205 one more unit test case commit | commitdiff | tree | snapshot
2019-03-03 gmungocJAL-3205 faster calculation with symmetric score matrix commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-2791exportFilteredFeature' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3093 unit test adapts to actual number of annotatio... feature/JAL-3093wrappedModeTooltips commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/JAL-1244stretchStatusMsg' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3139colocatedFeatures' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3154 disable reorder columns before adding to viewport commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3154tableColumnDrag' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3161annotationTooltipRange' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3140 update for change to SequenceI api commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ commit | commitdiff | tree | snapshot
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into... commit | commitdiff | tree | snapshot
2019-02-28 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... commit | commitdiff | tree | snapshot
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 commit | commitdiff | tree | snapshot
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG commit | commitdiff | tree | snapshot
2019-02-26 gmungocJAL-3201 JAL-2386 don't pre-select 'apply to all groups' commit | commitdiff | tree | snapshot
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances commit | commitdiff | tree | snapshot
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation commit | commitdiff | tree | snapshot
2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id... commit | commitdiff | tree | snapshot
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... commit | commitdiff | tree | snapshot
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... commit | commitdiff | tree | snapshot
2019-02-22 gmungocJAL-2738 don't set AF as feature score commit | commitdiff | tree | snapshot
2019-02-22 Ben SoaresJAL-3141 improved message for asking whether to delete... commit | commitdiff | tree | snapshot
2019-02-21 Ben SoaresJAL-3141 Sensible refactoring for confirming deleting... commit | commitdiff | tree | snapshot
2019-02-17 Ben SoaresJAL-3141 User warning when deleting old backup files... commit | commitdiff | tree | snapshot
2019-02-15 Ben SoaresJAL-3141 re-order deletion of old files and check lastM... commit | commitdiff | tree | snapshot
2019-02-14 Ben SoaresJAL-3141 Added warning/confirmation when suffixReverse... commit | commitdiff | tree | snapshot
2019-02-14 Ben SoaresJAL-3141 Moved 'Previously saved scheme' combo box... commit | commitdiff | tree | snapshot
2019-02-07 gmungocJAL-3140 updated to latest intervalstore.jar commit | commitdiff | tree | snapshot
2019-02-04 gmungocJAL-3143 update unit test for ID -> id change feature/JAL-3143ensemblJSON commit | commitdiff | tree | snapshot
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile... commit | commitdiff | tree | snapshot
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