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jalview.git
2018-01-02 kjvdheideJAL-1953 start work on storing nodes in a map per tree... commit | commitdiff | tree | snapshot
2017-12-21 kjvdheideJAL-281 added file identify criteria for PhyloXML and... commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-2874 made the actionlistener slightly clearer commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-2838 JAL-2872 added sorting from the Aptx frame... commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-281 moved utility methods to .io package commit | commitdiff | tree | snapshot
2017-12-20 kjvdheideJAL-281 split up TreeParser into separate format parsers commit | commitdiff | tree | snapshot
2017-12-19 kjvdheideJAL-281 created Nexus and PhyloXML parser classes commit | commitdiff | tree | snapshot
2017-12-19 kjvdheideJAL-281 cleared out useless tree parser class commit | commitdiff | tree | snapshot
2017-12-19 kjvdheideJAL-281 added phyloxml and nexus to jalview fileformats commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideJAL-1953 moved now-generic methods outside of Aptx... commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideJAL-1953 -External from all interfaces names commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideJAL-1953 attempt at changing Aptx's font to Jalview's commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideJAL-2844 cladogram no longer vertically aligned (was... commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideJAL-2844 made null tree nodes return null wrappers... commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' into commit | commitdiff | tree | snapshot
2017-12-18 kjvdheideJAL-1953 redundant tree interface instantiation removed commit | commitdiff | tree | snapshot
2017-12-15 kjvdheideJAL-2852 EPS saving code ported from TreePanel to Aptx. commit | commitdiff | tree | snapshot
2017-12-15 kjvdheideJAL-1953 added Y coordinate getter method commit | commitdiff | tree | snapshot
2017-12-15 kjvdheideJAL-2852 merged the EPS button adding from main branch... commit | commitdiff | tree | snapshot
2017-12-15 kjvdheideJAL-1953 node comparing now includes checking node... commit | commitdiff | tree | snapshot
2017-12-15 kjvdheideJAL-1953 removed deprecated interfaces commit | commitdiff | tree | snapshot
2017-12-15 kjvdheideJAL-2852 added EPS export button to File menu commit | commitdiff | tree | snapshot
2017-12-14 kjvdheideJAL-1953 more progress on interfaces, jalview binding... commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideJAL-2874 filtering alignment now also works when just... commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideJAL-2874 added filtering when a subtree is selected commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https... commit | commitdiff | tree | snapshot
2017-12-12 kjvdheideJAL-2877 disabled Jalview's own viewer for testing spikes/thomas commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-2872 hide sort button in Aptx unless it's actually... commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-2877 disabled Jalview's default tree viewer when... commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-1953 fixed interface misnaming commit | commitdiff | tree | snapshot
2017-12-11 kjvdheideJAL-1953 start on making everything interface based commit | commitdiff | tree | snapshot
2017-12-08 kjvdheideJAL-1953 renaming of concrete implementation as well commit | commitdiff | tree | snapshot
2017-12-08 kjvdheideJAL-2844 reallow clicks to the left of the root (groups... commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2866 and .jar removed again commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2866 forester .jar added to lib commit | commitdiff | tree | snapshot
2017-12-07 kjvdheideJAL-2872 Redundant Aptx GUI menu items hidden, sorting... commit | commitdiff | tree | snapshot
2017-12-06 kjvdheideJAL-2794 disabled branch colors on selection for now commit | commitdiff | tree | snapshot
2017-12-06 kjvdheideJAL-2871 Added check whether configuration has been... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 Sorting from the alignment view menu now funct... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 Rearranging and cleaning up of database query... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2794 associate leaves now iterates through ALL... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 various error popups for db querying now have... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 Strings for the various tree databases added commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 if pfam id is detected in first sequence its... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2847 added pfam to DBRef source name lookup commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2805 JAL-2847 JAL-281 added file path to Aptx frame... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 tree viewer interface expanded to include... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 filled in actionPerformed of the tree sort... commit | commitdiff | tree | snapshot
2017-12-05 kjvdheideJAL-2838 Aptx frames now appear in the alignment sortin... commit | commitdiff | tree | snapshot
2017-12-03 kjvdheideJAL-2847 start of cleaning up db loading code commit | commitdiff | tree | snapshot
2017-12-03 kjvdheideJAL-2844 rearranging code commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 release notes commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
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2017-11-30 Jim ProcterJAL-2849 fix commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 check added for clicks left of root node commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 entirely X coord based partitioning commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 somewhat better repainting commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 temporary kludge to draw a line commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 added grouping to alignment panel based on... commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 start on colouring back onto the alignment commit | commitdiff | tree | snapshot
2017-11-29 kjvdheideJAL-2844 added colouring to partition selection commit | commitdiff | tree | snapshot
2017-11-28 kjvdheideJAL-2844 added offset to x coord to make it equal 0... commit | commitdiff | tree | snapshot
2017-11-28 kjvdheideMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-11-28 kjvdheideJAL-2844 first go at partitioning, based on actual... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2740 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2827 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2842 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2852 JAL-2853 forester update commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2844 added selection threshold (non-adjusted calcul... commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2799 re-enabled change listener for Aptx's tabs... commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2844 line drawing at mouse click added on top of... commit | commitdiff | tree | snapshot
2017-11-27 kjvdheideJAL-2853 colours now enabled by default in Aptx commit | commitdiff | tree | snapshot
2017-11-26 kjvdheideJAL-2847 first rough attempt at loading in via database ID commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2799 rearranged AptxInit code commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2799 ALL trees are now loaded in as separate Aptx... commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2794 binding now exclusively supports single tab... commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideMerge branch 'kjvdh/features/PhylogenyViewer' of https... commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2838 start on sorting commit | commitdiff | tree | snapshot
2017-11-24 kjvdheideJAL-2838 made getAssociatedPanels public commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2794 reworked, everything routes via avport.sendsel... commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2794 removed several redundancies in the binding... commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-281 fixed misplaced quote in example text commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2844 mouse press code rearranged to prepare for... commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2847 small things, filled in actionperformeds commit | commitdiff | tree | snapshot
2017-11-22 kjvdheideJAL-2799 fixed selections not carrying over to tabs... commit | commitdiff | tree | snapshot
2017-11-21 kjvdheideJAL-2847 added database menu items and listeners commit | commitdiff | tree | snapshot
2017-11-21 kjvdheideMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff | tree | snapshot
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