jalview.git
2005-06-13 amwaterhouseprotected now public
2005-06-13 amwaterhouseQuit actionPerformed
2005-06-13 amwaterhouseGet colourScheme with seqs and width
2005-06-10 amwaterhouseSeqFetcher modified
2005-06-10 amwaterhouseremove imports
2005-06-10 amwaterhouseFastpaint is false initially
2005-06-10 amwaterhouselatest
2005-06-10 jprocteradded logs.Castor.level
2005-06-10 jprocteradded castor logger configuration.
2005-06-10 amwaterhouseRemove imports
2005-06-10 amwaterhouseset conservation/consensus in constructor
2005-06-10 jprocterremoved exception name from server error state (to...
2005-06-09 amwaterhouseremoved
2005-06-09 amwaterhousedeleted
2005-06-09 amwaterhousemoved from lib
2005-06-09 amwaterhousefor obfuscating
2005-06-09 amwaterhouseneeded for applet search
2005-06-09 amwaterhouseBuild Applet added
2005-06-09 amwaterhouseMonospaced
2005-06-09 amwaterhouseWarn if Textarea limit has been reached
2005-06-08 amwaterhousereplace space
2005-06-08 amwaterhousegroup recalc conserve
2005-06-08 amwaterhouserecalc group conserve
2005-06-08 amwaterhouseif missing forward slash
2005-06-08 amwaterhouseRecalc accelerated
2005-06-08 jprocterstyle change.
2005-06-08 jprocterheading
2005-06-08 jprocterpunctuation (sorry ;-)
2005-06-08 jproctergrammar.
2005-06-08 jprocterunterminated ul
2005-06-08 jprocternicer help.
2005-06-08 amwaterhouseSets sequence features
2005-06-08 amwaterhousespelling
2005-06-08 amwaterhouseSpelling
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL
2005-06-08 amwaterhouseGPL license added
2005-06-08 amwaterhouse*** empty log message ***
2005-06-08 amwaterhouseAdd email to about
2005-06-07 jproctermore truthful comment.
2005-06-07 jprocterquickie build instructions.
2005-06-07 jproctervery basic code convention. no licensing/stripping...
2005-06-07 jprocterbetter code convention name
2005-06-07 jprocterjalopy is used for sourcescrub target of build.xml...
2005-06-07 jprocterremoved signature for this jar
2005-06-07 jprocterloads of changes. Jalopy source formatting, better...
2005-06-07 jprocteradded a couple of debug statements for unix browser...
2005-06-06 amwaterhousecloses if accepted
2005-06-05 jproctermade error for browser configuration on unix a bit...
2005-06-05 jprocterfirefox now default for unixen.
2005-06-05 jproctermore subtle rearrangements
2005-06-03 jprocterReinstated 'create tree from selected region only'...
2005-06-02 jproctertidied the exceptions and ws server error behaviour
2005-06-02 amwaterhouseMenus
2005-06-02 amwaterhousenew
2005-06-02 amwaterhouse*** empty log message ***
2005-06-02 amwaterhouseWarn if URL not found
2005-06-02 amwaterhouseCut and paste changed
2005-06-02 amwaterhouseReverse order for windows, readin from url
2005-06-02 amwaterhousestartup file is jalview.org
2005-06-02 amwaterhouseName of xml file changed
2005-06-02 amwaterhouseCheck startup file is not null
2005-06-02 jprocterminor changes to make jalopy happy
2005-06-02 jprocterminor changes to try and make jalopy happy
2005-05-31 jprocterMoved comment so it doesn't break jalopy (this is not...
2005-05-30 jprocteradded the sorting entry to calculations, and corrected...
2005-05-30 jprocterChanged sortByPID to use the gapped PID function.
2005-05-30 jproctercomments
2005-05-30 jprocterAdded clustalW 'realignment' (primitive)
2005-05-30 jprocteradded default ClustalWS or MuscleWS to remove gaps.
2005-05-30 jprocterpropagated use of jalview.util.GapChars for gap removal.
2005-05-30 jproctermore robust parsing for DBset/DBname|id1|id2 type ids
2005-05-30 jproctermodified history for redundancy removal.
2005-05-30 jprocterfixed stacktrace potential for pairwise alignment action.
2005-05-30 jprocterModified output on stdout for similarity matrix.
2005-05-27 amwaterhouseimages moved
2005-05-27 jprocterfixed brain interruption bug.
2005-05-27 amwaterhouseignores blank lines read in and write out
2005-05-27 jprocterright ordering for RedundancyPanel constructor
2005-05-27 jprocteradded proper state check for failedJob flag.
2005-05-27 jprocterAdded jobFail state
2005-05-27 jprocterbetter recognition of MSF files.
2005-05-27 amwaterhouseAdded menus
2005-05-27 amwaterhouseedits
2005-05-27 amwaterhouseimage moved
2005-05-27 amwaterhousepref
2005-05-27 amwaterhousemenus
2005-05-27 amwaterhouseImage moved
2005-05-27 amwaterhouseidentity changed
2005-05-27 amwaterhouseCut and paste menus added
2005-05-27 amwaterhouseCut and paste changes
2005-05-27 amwaterhouseC&P changes
2005-05-27 amwaterhouseCheck if colos are null
2005-05-27 amwaterhouseCut and paste changes
2005-05-27 amwaterhouseAdd cut and paste menus
2005-05-27 amwaterhouseCutAndPaste changed
2005-05-27 jprocterAdded nicer header formatting for MSFfile output.
2005-05-27 jprocterrecovered changes from v 1.84
2005-05-27 amwaterhouseCheck if usrCol is null
2005-05-27 amwaterhouseNew cut and paste
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