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jalview.git
2023-07-19
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-19
James Procter
Merge branch 'patch/JAL-3855_fixup_pae' into develop
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2023-07-18
James Procter
Merge branch 'develop' into patch/JAL-3855_fixup_pae
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2023-07-18
James Procter
JAL-4153 comments re patch incorrectly committed under...
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2023-07-18
Ben Soares
JAL-4513 move comments
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2023-07-18
Ben Soares
JAL-4513 now re-add the SwingUtilities.invokeAndWait...
bug/JAL-4513_JvCacheableInputBoxTest_flaky_on_build_server
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2023-07-18
James Procter
JAL-3855 PAE matrices are transposed on import from...
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2023-07-18
James Procter
JAL-3855 JAL-4124 test checks asymmetric matrices are...
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2023-07-18
James Procter
JAL-3858 fix off-by-one in matrix visualisation and...
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2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
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2023-07-18
James Procter
JAL-3858 annotation .height is bigger than graphHeight...
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2023-07-18
Ben Soares
JAL-4513 reduce wait to invoke fail
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2023-07-18
Ben Soares
JAL-4513 add a SwingUtilities.invokeAndWait() to see...
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2023-07-18
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-17
Ben Soares
JAL-3599 Updated default eclipse to 'latest' and made...
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2023-07-17
James Procter
JAL-4119 TRACE level console message reporting download...
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2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
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2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
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2023-07-17
James Procter
JAL-4223 add testdata for test
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2023-07-17
James Procter
JAL-4090 mark JAL-4178 and JAL-4142 as known issues
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2023-07-17
James Procter
JAL-4217 move Commands.structureImageTest to testTask1
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2023-07-12
James Procter
JAL-4223 - test and patch to ensure numbering matches...
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2023-07-11
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
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2023-07-07
James Procter
JAL-4217 JAL-629 built in 25s time out waiting for...
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2023-07-07
James Procter
JAL-4090 update 2.11.3.0 release notes (with in-progres...
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2023-07-07
James Procter
Merge branch 'patch/JAL-4119_sifts_ftp_split' into...
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2023-07-07
James Procter
Merge branch 'develop' into patch/JAL-4195_cli_eps_expo...
patch/JAL-4195_cli_eps_export_npe
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2023-07-07
James Procter
JAL-4195 add exception handling for all other CommandsT...
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2023-07-07
James Procter
JAL-4221 update description when transferring annotatio...
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2023-07-07
James Procter
JAL-629 even more console debug for --structureviewer...
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2023-07-06
James Procter
JAL-629 liberal defensive coding, comments about refact...
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2023-07-06
James Procter
JAL-629 make —structure image work again after threadin...
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2023-07-06
James Procter
JAL-4217 catch case when the structure viewer doesn...
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2023-07-06
James Procter
JAL-4217 interruptedExceptions should also break any...
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2023-07-06
James Procter
JAL-2292 verify mixed case alignment actually aligns
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2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExp...
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2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExp...
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2023-07-05
James Procter
Merge branch 'patch/JAL-2292_caseSensitivePAE' into...
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2023-07-05
James Procter
Merge branch 'patch/JAL-4213_addref_with_selection...
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2023-07-04
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-04
James Procter
Merge branch 'merge/from_2_11_2_7_to_2_11_3_0' into...
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2023-07-04
James Procter
JAL-4117 JAL-1551 source licensing
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2023-07-04
James Procter
JAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
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2023-06-30
James Procter
JAL-4217 try really hard to shut down and dispose of...
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2023-06-30
James Procter
JAL-4216 release notes
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2023-06-30
James Procter
JAL-4216 compute size of annotation using start/end...
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2023-06-30
James Procter
Merge branch 'task/JAL-4001_Plausible_API' into develop
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2023-06-30
Ben Soares
JAL-4001 Added a random id to User-Agent to ensure...
task/JAL-4001_Plausible_API
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2023-06-29
James Procter
Merge branch 'task/JAL-4001_Plausible_API' into develop
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2023-06-29
James Procter
JAL-4117 JAL-4001 plausible analytics release notes...
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2023-06-29
James Procter
JAL-4090 update from 2.11.2.7 JAL-4117 - version bump...
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2023-06-29
James Procter
JAL-4001 analytics url provided by https://jalview...
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2023-06-28
Ben Soares
JAL-4001 change Plausible discovery URL
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2023-06-28
Ben Soares
JAL-4001 remove headless code from analytics
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2023-06-28
Ben Soares
JAL-4001 Remove analytics for --headless mode
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2023-06-27
Ben Soares
JAL-4001 Added useful props information
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2023-06-22
Ben Soares
Merge branch 'develop' into task/JAL-4001_Plausible_API
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2023-06-22
Ben Soares
JAL-4001 Fix default API url
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2023-06-22
James Procter
JAL-4213 don’t pass active selection when actioning...
patch/JAL-4213_addref_with_selection
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2023-06-22
James Procter
JAL-4213 - document the addReferenceAnnotations method...
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2023-06-22
Ben Soares
JAL-4001 Added 'installation' property.
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2023-06-22
James Procter
JAL-2292 - ensure mapping is built for equal symbols...
patch/JAL-2292_caseSensitivePAE
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2023-06-22
Ben Soares
JAL-4001 Added lookup to https://jalview.org/config...
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2023-06-22
Ben Soares
JAL-4019 corrected to '>' to '>=' for percentage compar...
bug/JAL-4125_flatlaf_quithandler_external_structureviewers_not_closed
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2023-06-21
James Procter
Merge branch 'patch/JAL-4196_structure_viewer_synchroni...
patch/JAL-4196_structure_viewer_synchronising
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2023-06-21
Ben Soares
JAL-4001 Rationalise user-agent string into HttpUtils
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2023-06-21
Ben Soares
JAL-4001 Change wording from google to plausible or...
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2023-06-20
Ben Soares
JAL-4001 rename the init method
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2023-06-20
Ben Soares
JAL-4001 Working Plausible analytics
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2023-06-20
Ben Soares
JAL-4001 Plausible class
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2023-06-20
Ben Soares
JAL-4001 Added a genuine client_id (from gtag). Added...
task/JAL-4001_migrate_googleanalytics_to_GA4
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2023-06-17
Ben Soares
JAL-4001 Check --nousagestats before doing analytics...
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2023-06-16
Ben Soares
JAL-4001 Add a _geo=1 to query string and JSON. Add...
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2023-06-16
Ben Soares
JAL-4001 Remove jgoogleanalytics code and jar
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2023-06-16
Ben Soares
JAL-4001 make page_location the same encoding as the...
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2023-06-15
Ben Soares
JAL-4001 Changed for Java 8 compatibility
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2023-06-14
Ben Soares
JAL-4001 Trying to see extra information in GA dashboard
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2023-06-14
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
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2023-06-13
Ben Soares
JAL-3599 Tidyup for all OS to use ScheduledExecutor
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2023-06-12
Ben Soares
JAL-3599 replaced a build dependency for jalviewjsLaunc...
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2023-06-11
Ben Soares
JAL-3599 Cater for macOS. ScheduledExecutor timeout...
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2023-06-11
Ben Soares
JAL-3599 Cater for macOS. --timeout not working yet
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2023-06-09
Ben Soares
JAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...
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2023-06-09
Ben Soares
JAL-3599 Deliberate NPE to see if build plan fails
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2023-06-09
Ben Soares
JAL-3599 fixed placement of 'First Run' file for chromi...
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2023-06-09
Ben Soares
JAL-3599 --no-sandbox --disable-gpu and Thorium flatpak...
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2023-06-09
Ben Soares
JAL-3599 STDOUT and STDERR saved and sent to System...
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2023-06-09
Ben Soares
JAL-3599 Not redirecting STDOUT or STDERR just for...
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2023-06-09
Ben Soares
JAL-3599 More stderr/stdout output to logs when anything
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2023-06-09
Ben Soares
JAL-3599 More stderr/stdout output to logs when failed
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2023-06-09
Ben Soares
JAL-3599 increase real and virtual time chrome runs...
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2023-06-08
Ben Soares
JAL-3599 gradle tasks to test JalviewJS launches in...
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2023-06-08
Ben Soares
JAL-4001 Only send defaultParams for application_launch...
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2023-06-08
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
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2023-06-08
James Procter
Merge branch 'develop' into patch/JAL-4196_structure_vi...
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2023-06-08
James Procter
JAL-4196 make very sure we avoid CME by defensively...
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2023-06-08
James Procter
JAL-4196 report an error if structure view doesn’t...
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2023-06-08
James Procter
JAL-4196 structure view cli tests wait using new jalvie...
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2023-06-08
Ben Soares
JAL-3416 FlatLaf SystemInfo failing in JalviewJS. ...
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