git://source.jalview.org
/
jalview.git
/ shortlog
commit
grep
author
committer
pickaxe
?
search:
re
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
jalview.git
2018-01-30
kiramt
JAL-2759 updateForDeletedRegion no longer needed
commit
|
commitdiff
|
tree
|
snapshot
2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-30
kiramt
JAL-2759 Rationalising hidden cols cursor, and sorting...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-30
kiramt
JAL-2759 comment
commit
|
commitdiff
|
tree
|
snapshot
2018-01-30
kiramt
JAL-2759 Additional tests and tweaks to numColumns...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-30
kiramt
JAL-2759 Keep numColumns up to date
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 remove unneeded cast
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
Merge branch 'feature/JAL-2759' of https://source.jalvi...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 Combine findRegionForColumn code in HiddenColu...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
gmungoc
Merge branch 'feature/JAL-2759' of https://source.jalvi...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
gmungoc
JAL-1270 testPadGaps() added
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 numColumns reset
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 remove redundant hiddenColumns.clear()
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 Tidy
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 make a new cursor instead of resetting, update...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
kiramt
JAL-2759 Fix unintended type change
commit
|
commitdiff
|
tree
|
snapshot
2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressio...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-26
Jim Procter
Merge branch 'releases/Release_2_10_3_Branch' into...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-26
kiramt
JAL-2778 try another way to draw sequences with reduced...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
commit
|
commitdiff
|
tree
|
snapshot
2018-01-26
kiramt
JAL-2778 tightened up use of resetAlignmentDims
commit
|
commitdiff
|
tree
|
snapshot
2018-01-25
kiramt
JAL-2778 Tidy
commit
|
commitdiff
|
tree
|
snapshot
2018-01-25
kiramt
JAL-2778 added JAL-2851 fix to avoid confusion
commit
|
commitdiff
|
tree
|
snapshot
2018-01-25
kiramt
JAL-2778 Reinstate id width adjuster
commit
|
commitdiff
|
tree
|
snapshot
2018-01-24
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
releases/Release_2_10_3_Branch
Release_2_10_3b1
commit
|
commitdiff
|
tree
|
snapshot
2018-01-24
Jim Procter
JAL-2858 update release date and rejig what's new message
commit
|
commitdiff
|
tree
|
snapshot
2018-01-23
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
commit
|
commitdiff
|
tree
|
snapshot
2018-01-23
Jim Procter
JAL-2858 fix what's new
commit
|
commitdiff
|
tree
|
snapshot
2018-01-23
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
commit
|
commitdiff
|
tree
|
snapshot
2018-01-23
Jim Procter
JAL-2858 update latest release notes link in TOC
commit
|
commitdiff
|
tree
|
snapshot
2018-01-23
Jim Procter
JAL-2859 release notes
commit
|
commitdiff
|
tree
|
snapshot
2018-01-23
Jim Procter
JAL-2858 update release notes
commit
|
commitdiff
|
tree
|
snapshot
2018-01-22
Jim Procter
Merge branch 'develop' into releases/Release_2_10_3_Branch
commit
|
commitdiff
|
tree
|
snapshot
2018-01-22
Jim Procter
JAL-2858 release notes for 2.10.3b1 (including revision...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-22
Jim Procter
JAL-2858 bump version number for 2.10.3b1
commit
|
commitdiff
|
tree
|
snapshot
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-22
kiramt
JAL-2759 Various minor HiddenColumns updates after...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-19
kiramt
JAL-2759 Changes to getVisibleSequenceStrings after...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
commit
|
commitdiff
|
tree
|
snapshot
2018-01-19
kiramt
JAL-2759 Update to getVisibleStartAndEndIndex after...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-18
kiramt
JAL-2759 change subtractVisibleColumns and removal...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
commit
|
commitdiff
|
tree
|
snapshot
2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-18
kiramt
JAL-2759 Updated test
commit
|
commitdiff
|
tree
|
snapshot
2018-01-18
kiramt
JAL-2759 unit tests (incomplete)
commit
|
commitdiff
|
tree
|
snapshot
2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retri...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Paren...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
kiramt
JAL-2759 setup hideBitSet over range for hideInsertions
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
kiramt
JAL-2759 Unit test for PopupMenu hideInsertions code
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
kiramt
JAL-2759 Moved alignment annotation code out of HiddenC...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-16
kiramt
JAL-2759 Replaced StringBuffer with StringBuilder;...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 More compact iterator usage; after review
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 First pass instantiate hiddenColumns collectio...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 getVisContigsIterator returns VisibleContigsIt...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Rename hideInsertionsFor to hideList, after...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Simplified HiddenColumns constructor after...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Changed VisibleColsCollection constructor...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Minor doc and naming changes
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Updated absoluteToVisibleColumn doc (prev...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Comments and renaming for has(Many)HiddenColum...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Tidy up javadoc and naming in HiddenColumnsCur...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Updated HiddenColumnsTest::testIsVisible follo...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Update to getHiddenBoundaryRight + unit test...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-15
kiramt
JAL-2759 Updates following review
commit
|
commitdiff
|
tree
|
snapshot
2018-01-12
kiramt
JAL-2886 trivial unit test fix
commit
|
commitdiff
|
tree
|
snapshot
2018-01-11
kiramt
Merge remote-tracking branch 'origin/task/JAL-2662...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-11
kiramt
JAL-2662 Updated README
task/JAL-2662
commit
|
commitdiff
|
tree
|
snapshot
2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
commit
|
commitdiff
|
tree
|
snapshot
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
commit
|
commitdiff
|
tree
|
snapshot
2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
commit
|
commitdiff
|
tree
|
snapshot
2018-01-09
gmungoc
JAL-2843 test roundtrip of feature colours and filters...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-09
gmungoc
JAL-2843 unit tests for writing filters to Jalview...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
commit
|
commitdiff
|
tree
|
snapshot
2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
commit
|
commitdiff
|
tree
|
snapshot
2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
commit
|
commitdiff
|
tree
|
snapshot
2017-12-19
Jim Procter
JAL-2880 disabled non-functional test - Jmol parser...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-14
gmungoc
JAL-2843 missed Castor class
commit
|
commitdiff
|
tree
|
snapshot
2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-14
gmungoc
JAL-2843 missed Castor class
commit
|
commitdiff
|
tree
|
snapshot
2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
commit
|
commitdiff
|
tree
|
snapshot
2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
commit
|
commitdiff
|
tree
|
snapshot
2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-08
gmungoc
JAL-2843 example filters added
commit
|
commitdiff
|
tree
|
snapshot
2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
commit
|
commitdiff
|
tree
|
snapshot
2017-12-08
gmungoc
JAL-2843 methods relocated
commit
|
commitdiff
|
tree
|
snapshot
2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview feature...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
commit
|
commitdiff
|
tree
|
snapshot
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
commit
|
commitdiff
|
tree
|
snapshot
2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
commit
|
commitdiff
|
tree
|
snapshot
2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
commit
|
commitdiff
|
tree
|
snapshot
2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
commit
|
commitdiff
|
tree
|
snapshot
next