| 2005-04-29 |
amwaterhouse | preferences moved to desktop |
commit | commitdiff | tree | snapshot |
| 2005-04-29 |
amwaterhouse | read in preferences at start up |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
jprocter | Added MuscleWS back in |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
jprocter | First try with MuscleWS and vamsas.simple.objects |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
jprocter | First try with MuscleWS |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | no longer used |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Label changes as AF recommended |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | must set consensus in child colourscheme |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Updated for use by preferences panel |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | GUI changes |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Preferences panel added |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Viewport now looks at preferences when loading up |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Set fullscreen if in preferences |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | can search ids |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | set as default added |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | search ids added |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Menu names changed |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | JInternalFrame is within class. Method to load default... |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | Preferences panel added |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
amwaterhouse | set gap char modified |
commit | commitdiff | tree | snapshot |
| 2005-04-28 |
jprocter | added MuscleWS and did a bit more standardisation of... |
commit | commitdiff | tree | snapshot |
| 2005-04-25 |
amwaterhouse | if applet, load properties in void init |
commit | commitdiff | tree | snapshot |
| 2005-04-25 |
amwaterhouse | +1 in fastpaint sends coloured text outofbounds |
commit | commitdiff | tree | snapshot |
| 2005-04-25 |
amwaterhouse | dont update overview every repaint |
commit | commitdiff | tree | snapshot |
| 2005-04-25 |
amwaterhouse | Loading alignment threaded |
commit | commitdiff | tree | snapshot |
| 2005-04-25 |
amwaterhouse | Syncronize drawPanel, as overviewpanel is threaded |
commit | commitdiff | tree | snapshot |
| 2005-04-25 |
amwaterhouse | Overviewpanel allows for large alignments |
commit | commitdiff | tree | snapshot |
| 2005-04-21 |
amwaterhouse | add consslider to palette layer |
commit | commitdiff | tree | snapshot |
| 2005-04-21 |
amwaterhouse | Allow for clipped region when printing |
commit | commitdiff | tree | snapshot |
| 2005-04-21 |
amwaterhouse | Tick 5 and 10 marks |
commit | commitdiff | tree | snapshot |
| 2005-04-21 |
amwaterhouse | Printing changes |
commit | commitdiff | tree | snapshot |
| 2005-04-21 |
amwaterhouse | update conSlider when colour changes |
commit | commitdiff | tree | snapshot |
| 2005-04-21 |
amwaterhouse | Allow for -open arg |
commit | commitdiff | tree | snapshot |
| 2005-04-19 |
amwaterhouse | no need to keep setting selected, its on the palette... |
commit | commitdiff | tree | snapshot |
| 2005-04-19 |
amwaterhouse | add splash to palette layer |
commit | commitdiff | tree | snapshot |
| 2005-04-19 |
amwaterhouse | Printing of trees corrected. Antialiasing on |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | painting syncronized, spin increments in units, not... |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | wrap alignment box paints correctly |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | blosum62 must have its on consensus |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | setendres -1 |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | position of bioinformatics |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | set PNG antialiasing on |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | show sliders when first selecting conservation,PID |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | dont drag beyond end of alignment |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | selected group draws last residue |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | repaint removed |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | fastPaint modified incase scroll is more than page... |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | calls fontChanged |
commit | commitdiff | tree | snapshot |
| 2005-04-18 |
amwaterhouse | fontChanged method added, componentListener removed |
commit | commitdiff | tree | snapshot |
| 2005-04-16 |
amwaterhouse | make sure we draw last line of wrapped alignment |
commit | commitdiff | tree | snapshot |
| 2005-04-16 |
amwaterhouse | allow for final line of alignment |
commit | commitdiff | tree | snapshot |
| 2005-04-16 |
amwaterhouse | fix wrap alignment vscroll visible amount |
commit | commitdiff | tree | snapshot |
| 2005-04-16 |
amwaterhouse | check if colourscheme is null |
commit | commitdiff | tree | snapshot |
| 2005-04-16 |
amwaterhouse | AlignPanel RefreshPanels put into paintComponent |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | clustalx exception in colourchange |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | no longer used |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | consensus held in residueColour |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | no need to send consensus |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | takes on methods previously in desktop |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | no need to send consensus everytime |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | pid and conservation changes |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | adjust annotation panel height when font changed |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | pid and conservation slider moved to sliderPanel |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | fontmetrics must be obtained after font change |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | draw graph label lower down |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | public vconsensus available for PID and Blosum |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | PID and conservation colouring changes |
commit | commitdiff | tree | snapshot |
| 2005-04-15 |
amwaterhouse | conservation & consensus recalc if group changed |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | comment out jnetpropb, h and c |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | not added to the palette layer |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | use 3 as the threshold |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | if image is null, repaint |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | blosum colour now displayed ok |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | use webservice info |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | update status bar with mouse over |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | use webservice info to display web service state |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
amwaterhouse | new class |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
jprocter | consistent percentage gaps filter for conservation... |
commit | commitdiff | tree | snapshot |
| 2005-04-14 |
jprocter | added quality calculation from Jalview118, and scale... |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
jprocter | Gap characters are now properly detected in the conserv... |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
jprocter | Fixed so that all alternate residues are used to calcul... |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
jprocter | Added order-preservation for clustalW alignment. No... |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | sortByTreeMenu added |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | use AlignFrame.NEW_WINDOW_WIDTH |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | getTree method added |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | if not active tree, colour threshold grey |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | use NEW_WINDOW_WIDTH |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | invalidate alignPanel before changing size |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | new constructor for addtodesktop, sliders set to top... |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | draws last residue |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | repainting issues fixed |
commit | commitdiff | tree | snapshot |
| 2005-04-13 |
amwaterhouse | treeMenuItem added, conservation sliders, finder top... |
commit | commitdiff | tree | snapshot |
| 2005-04-11 |
jprocter | added the alignment quality calculation from the old... |
commit | commitdiff | tree | snapshot |
| 2005-04-11 |
jprocter | Conservation symbols : + = all props are conserved... |
commit | commitdiff | tree | snapshot |
| 2005-04-11 |
jprocter | Fixed the job-failed message. |
commit | commitdiff | tree | snapshot |
| 2005-04-11 |
jprocter | Now tries to set viewing parameters for distances and... |
commit | commitdiff | tree | snapshot |
| 2005-04-08 |
jprocter | slight mods again. |
commit | commitdiff | tree | snapshot |
| 2005-04-08 |
amwaterhouse | try out spinning logo |
commit | commitdiff | tree | snapshot |
| 2005-04-08 |
amwaterhouse | return from painting if size is 0 |
commit | commitdiff | tree | snapshot |
| 2005-04-08 |
amwaterhouse | Printing wrapped alignment corrected |
commit | commitdiff | tree | snapshot |
| next |
git://source.jalview.org / jalview.git / shortlog