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jalview.git
2021-09-16
Jim Procter
JAL-3794 X and N are counted as DNA characters, but...
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2021-09-16
Jim Procter
JAL-3794 new test for recognition of protein or DNA...
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2021-09-16
Ben Soares
JAL-3761 listToArray became rangeListToArray
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2021-09-16
gmungoc
JAL-3761 more consistent parameter naming
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2021-09-16
gmungoc
JAL-3761 helper method reinstated to avoid code duplication
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2021-09-16
gmungoc
JAL-3761 locateInFrom/To revised with tests; unused...
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2021-09-16
gmungoc
JAL-3761 extra check that VCF feature is fully mappable...
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2021-09-16
gmungoc
JAL-3761 debugged and working (but not tidied) locateIn...
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2021-09-16
Ben Soares
JAL-3761 listToArray became rangeListToArray
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2021-09-16
gmungoc
JAL-3761 locateInFrom2 work in progress commit
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2021-09-15
gmungoc
JAL-3761 unit test for MapList.countPos()
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2021-09-15
gmungoc
JAL-3761 failing test, formatting, method renamed
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2021-09-15
gmungoc
JAL-3761 failing tests for locateInFrom/To with overlap...
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2021-09-15
gmungoc
JAL-3751 only merge strictly contiguous ranges of mappings
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2021-09-15
gmungoc
JAL-3788 synchronize concurrent findColour() and alignm...
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2021-09-15
Ben Soares
JAL-3818 formatting
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2021-09-15
gmungoc
JAL-3818 process Jmol callbacks in AWT thread
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2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
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2021-09-15
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
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2021-09-15
Ben Soares
JAL-3829 Fixed Jmol jar -- duplicates of other classes...
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2021-09-15
Jim Procter
Merge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride...
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2021-09-15
Ben Soares
Merge branch 'develop' into merge/develop_ben2
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2021-09-15
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-14
Jim Procter
JAL-3815 default /etc/jalview_properties under utils...
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2021-09-14
Jim Procter
JAL-3829 parallel not welcome here
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2021-09-14
Jim Procter
JAL-3829 test flakiness and human flakiness
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2021-09-14
Jim Procter
JAL-3829 more info on test fail - seems to be flaky
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2021-09-14
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
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2021-09-14
Ben Soares
JAL-3521 Adjusted wrapper shell script and .desktop...
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2021-09-14
Ben Soares
JAL-3521 High quality file icons for jalview associated...
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2021-09-14
Ben Soares
JAL-3521 Change grouped Jalview windows on linux taskba...
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2021-09-14
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-14
Jim Procter
JAL-3551 - doc tweak
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2021-09-14
Jim Procter
JAL-3855 JAL-3829 better checks on PDB or mmCIF file...
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2021-09-14
Jim Procter
JAL-3829 JAL-3855 moved routing for retrieving structur...
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2021-09-14
Jim Procter
JAL-3829 JAL-3855 ignore case when detecting alphafold ID
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2021-09-14
Jim Procter
JAL-3855 detect an alphafold model and import its tempe...
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2021-09-14
Jim Procter
JAL-3829 move mock query and responses to files
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2021-09-14
Ben Soares
JAL-2422 Also look in ~/Applications for ChimeraX on...
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2021-09-14
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
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2021-09-14
Jim Procter
Merge branch 'feature/JAL-2422ChimeraX' into develop
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2021-09-14
Jim Procter
JAL-3829 3d-beacons doesn’t work as a sequence source...
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2021-09-14
Jim Procter
JAL-3829 avoid sending rubbish to PDBe search api
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2021-09-14
Jim Procter
JAL-3829 some providers don’t provide model quality...
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2021-09-14
Jim Procter
JAL-3829 allow multiple URL mocks and include P01308...
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2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
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2021-09-14
Ben Soares
JAL-2422 Fixed URL encoding of REST calls (broken paths...
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2021-09-13
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
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2021-09-13
Ben Soares
JAL-2422 Fixed URL encoding of REST calls (broken paths...
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2021-09-13
Ben Soares
Merge branch 'develop' into feature/JAL-2422ChimeraX
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2021-09-13
Jim Procter
Merge branch 'releases/Release_2_11_2_Branch' into...
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2021-09-13
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-13
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-13
Jim Procter
JAL-3829 ensure unmock the FTS PDB and TDB clients...
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2021-09-13
Ben Soares
JAL-2422 Added linux rpm and deb install locations...
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2021-09-13
Jim Procter
JAL-3829 minimal test of additional TDB filters - not...
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2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
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2021-09-12
Jim Procter
JAL-3829 JalviewJS workarounds/patches
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2021-09-12
Jim Procter
JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...
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2021-09-11
Jim Procter
JAL-3829 ensure tests use mocked service - proper excep...
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2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
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2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queri...
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2021-09-10
Jim Procter
JAL-3829 insert title for structures from PDBe
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2021-09-10
Jim Procter
JAL-3829 update for v1.0 3d-beacons api spec
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2021-09-10
Jim Procter
JAL-3829 point at production 3d-beacons url
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2021-09-08
Jim Procter
JAL-3829 refactor and JAL-3391 JAL-2935 first stab...
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2021-09-08
Jim Procter
JAL-3829 allow client-side selection of structures...
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2021-09-08
Jim Procter
JAL-3829 JAL-3868 TODO
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2021-09-08
Jim Procter
JAL-3829 formatting
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2021-09-08
Jim Procter
JAL-3829 integration test verifying mock response is...
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2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
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2021-09-06
Jim Procter
JAL-3829 look up column in FTS data
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2021-09-06
Jim Procter
JAL-3829 mocking for PDBFTS for related query to Unipro...
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2021-09-06
Jim Procter
JAL-3829 pull out structure chooser query source tests...
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2021-09-03
Jim Procter
JAL-3829 JAL-3865 test structure chooser queries to...
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2021-09-03
Jim Procter
JAL-3829 use sequence dependent constructor for structu...
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2021-09-03
Jim Procter
JAL-3829 mocking for testing 3D-Beacons FTS endpoint
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2021-09-03
Jim Procter
JAL-3863 promote non-canonical version of dbref to...
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2021-09-03
Jim Procter
JAL-3829 comments on the 3D structure chooser’s initial...
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2021-09-03
Jim Procter
JAL-3865 isolate PDB and TDB clients and last query...
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2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
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2021-09-03
Jim Procter
JAL-3829 JAL-3865 StructureChooserQuerySource implement...
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2021-09-03
Jim Procter
JAL-3855 don’t need to query Alphafold2 repository...
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2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
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2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
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2021-09-02
Jim Procter
Merge branch 'cherry-pick/r2_11_2_JAL-3509' into develop
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2021-09-02
gmungoc
JAL-1842 unit test updated for EnsemblGene feature...
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2021-09-02
gmungoc
JAL-1842 adjust code to match changed semantics of...
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2021-09-02
gmungoc
JAL-3509 JAL-1842 minor tidying of code
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2021-09-02
gmungoc
JAL-1842 remove redundant call to FeatureRenderer.featu...
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2021-09-02
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
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2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
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2021-08-30
Jim Procter
JAL-3863 fix test and note about fragility
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2021-08-30
Jim Procter
JAL-3863 add canonical DBRefEntry flag to Jalview project
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2021-08-30
Jim Procter
JAL-3829 generalised Alphafold retrieval mechanism...
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2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
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2021-08-30
Jim Procter
JAL-3829 Structure chooser specific FTS interface and...
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2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
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2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
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2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
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