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jalview.git
2018-01-29 kiramtJAL-2759 Fix unintended type change commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... commit | commitdiff | tree | snapshot
2018-01-22 kiramtJAL-2759 Various minor HiddenColumns updates after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Changes to getVisibleSequenceStrings after... commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Moved propagateInsertions out of HiddenColumns commit | commitdiff | tree | snapshot
2018-01-19 kiramtJAL-2759 Update to getVisibleStartAndEndIndex after... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 change subtractVisibleColumns and removal... commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 Updated test commit | commitdiff | tree | snapshot
2018-01-18 kiramtJAL-2759 unit tests (incomplete) commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Minor doc and naming changes commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updates following review commit | commitdiff | tree | snapshot
2017-11-24 kiramtJAL-2759 update benchmark code commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2842 JAL-2759 change to SeqPanel moveCursor commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 code tidy commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 performance tweaks commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call commit | commitdiff | tree | snapshot
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 reinstate change from develop (JAL-2636) someh... commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2811 release note commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2541 not in 2.10.3, JAL-2831 signed off. commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 11th hour release today commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 Move isVisible to use cursor commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 tidy commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 Update tests commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests commit | commitdiff | tree | snapshot
2017-11-16 Jim ProcterJAL-2541 JAL-2829 JAL-2830 JAL-2822 catch all release... commit | commitdiff | tree | snapshot
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... commit | commitdiff | tree | snapshot
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region commit | commitdiff | tree | snapshot
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode... commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2831 ported to applet commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 tidies and tests commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 tidy commit | commitdiff | tree | snapshot
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2811 Changed to overlay on via graphics context... commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2811 Missed commit commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2811 Made it work for hidden columns/seqs too commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 Attempt at cursor fix for wrapped mode commit | commitdiff | tree | snapshot
2017-11-14 Jim ProcterJAL-2758 update uniprot retrieval test commit | commitdiff | tree | snapshot
2017-11-14 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 deal with hidden cols and seqs in new cursor... commit | commitdiff | tree | snapshot
2017-11-14 kiramtJAL-2831 Added move viewport event and set up cursor... commit | commitdiff | tree | snapshot
2017-11-14 kiramtMerge branch 'imp/JAL-2774' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2758 release notes commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2698 formatting commit | commitdiff | tree | snapshot
2017-11-13 kiramtJAL-2811 Tidy commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterMerge branch 'features/JAL-2758_shorteruniprot' into... commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2758 remove configurable behaviour - Uniprot sequen... commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2758 typo commit | commitdiff | tree | snapshot
2017-11-13 kiramtJAl-2811 Working for wrapped panels too commit | commitdiff | tree | snapshot
2017-11-13 gmungocJAL-2662 tweak README, format code commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2698 what's new... commit | commitdiff | tree | snapshot
2017-11-13 kiramtJAL-2811 Add layer for cursor in SeqCanvas commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2810 release notes commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterMerge branch 'imp/JAL-2810_ftsIDtab' into develop commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2698 stub for 2.10.3 new known issues entries commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2702 groovy interpreter update and java 9 jnlp... commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterMerge branch 'bug/JAL-2702_groovyconsoleJava9' into... commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2702 --illegal-access=warn for JVM launch commit | commitdiff | tree | snapshot
2017-11-13 gmungocJAL-2176 removed unused Sequence.index commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2702 update to groovy 2.4.12 commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2810 updated help docs for auto search checkbox... commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2810 updated screenshots in documentation commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2810 auto search checkbox state stored as user... commit | commitdiff | tree | snapshot
2017-11-13 gmungocJAL-2679 example accession changed to CAD01290 commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2810 mainFramTabs -> tabs commit | commitdiff | tree | snapshot
2017-11-13 Jim ProcterJAL-2810 simpler tooltip (assume user will work out... commit | commitdiff | tree | snapshot
2017-11-13 kiramtJAL-2759 convert findColumnPosition to use cursor commit | commitdiff | tree | snapshot
2017-11-13 kiramtJAL-2759 Converted getHiddenBoundaryLeft/Right to use... commit | commitdiff | tree | snapshot
2017-11-10 gmungocJAL-2829 fixes and unit tests bug/JAL-2829deleteCharsWithGaps commit | commitdiff | tree | snapshot
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