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2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices colou... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 JAL-1268 document RNA Helices and T-Coffee... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list... commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices' commit | commitdiff | tree | snapshot
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin... commit | commitdiff | tree | snapshot
2014-04-27 Jim Proctertest for JAL-952 commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into Release_2_8... commit | commitdiff | tree | snapshot
2014-04-25 Jim Procterfix for JAL-1268 commit | commitdiff | tree | snapshot
2014-04-25 Jim Proctertest for JAL-1268 commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset... commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only... commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML... commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that... commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to... commit | commitdiff | tree | snapshot
2014-04-25 Jim ProcterJAL-1177 refactored command line test harness commit | commitdiff | tree | snapshot
2014-04-25 Jim Proctertest for JAL-1177 store and recover RNA secondary struc... commit | commitdiff | tree | snapshot
2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set... commit | commitdiff | tree | snapshot
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... commit | commitdiff | tree | snapshot
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release commit | commitdiff | tree | snapshot
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1458 updated logo for installer commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1355 keys for colours commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterfix for JAL-1438 commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1485 JAL-1483 show i18n key for different available... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 JAL-1355 i18n for score model submenu commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to constru... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1485 commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDat... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 don't include empty columns if no upstream... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1355 JAL-1466 i18n for flanking sequence menu entry... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-741 (poss related JAL-971) - fix NPE raised when... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures... commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL... commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterfix for JAL-1478 commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1477 tooltip commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1477 first implementation of 'View all representati... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequenc... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the... commit | commitdiff | tree | snapshot
2014-04-21 Jim Proctertidy imports commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset... commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterdon't finness the alignment annotation modification... commit | commitdiff | tree | snapshot
2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 menu entries for different score models availa... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservatio... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 show available score matrices for use in PCA... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... commit | commitdiff | tree | snapshot
2014-04-21 Jim ProcterJAL-1355 missing message commit | commitdiff | tree | snapshot
2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation... commit | commitdiff | tree | snapshot
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to... commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterJAL-1211 - pick up site-defined defined window geometry... commit | commitdiff | tree | snapshot
2014-04-04 Jim Procterfix for JAL-1461 - check that filetype setting in brows... commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2... commit | commitdiff | tree | snapshot
2014-04-04 Jim ProcterJAL-1335 typo and 'edit' action commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-1226' into Release_2_8_1_Branch_i18n commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-1226' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-26 Jim Procterfix for JAL-1226 commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-686' into Release_2_8_1_Branch_i18n commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterMerge branch 'JAL-686' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot... commit | commitdiff | tree | snapshot
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating... commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterJAL-1355 typo in key commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report... commit | commitdiff | tree | snapshot
2014-02-25 Jim ProcterJAL-1454 increase max for tqli iterations and throw... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-21 Jim Procterpatch for JAL-1449 - continuance of JAL-1364 - check... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for readin... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1354 typo commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid... commit | commitdiff | tree | snapshot
2014-02-21 Jim ProcterJAL-1354 quoted format strings are not substituted commit | commitdiff | tree | snapshot
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta... commit | commitdiff | tree | snapshot
2014-02-20 Jim Proctertest and data for JAL-1447 commit | commitdiff | tree | snapshot
2014-02-20 Jim ProcterJAL-1447 - more flexible testing for file format Identi... commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2014-02-18 Jim Procterclear out 2.8.0b1 what's new and add JAL-1445 to list... commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1445 basic help docs for feature commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1445 JAL-1354 english strings for select by feature commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1445 (shift+) double click on feature type in deskt... commit | commitdiff | tree | snapshot
2014-02-18 Jim ProcterJAL-1446 use popup event trigger instead of right-click... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 added menu items to select containing/non... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 ported routine for selecting containing/non... commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-1445 expose columnSelection setter. commit | commitdiff | tree | snapshot
2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that... commit | commitdiff | tree | snapshot
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