jalview.git
2021-09-15 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2021-09-15 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
2021-09-15 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2021-09-14 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
2021-09-14 Jim ProcterJAL-3829 parallel not welcome here
2021-09-14 Jim ProcterJAL-3829 test flakiness and human flakiness
2021-09-14 Jim ProcterJAL-3829 more info on test fail - seems to be flaky
2021-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2021-09-14 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop...
2021-09-14 Ben SoaresJAL-3521 High quality file icons for jalview associated...
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba...
2021-09-14 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2021-09-14 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
2021-09-14 Jim ProcterJAL-3551 - doc tweak
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file...
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur...
2021-09-14 Jim ProcterJAL-3829 JAL-3855 ignore case when detecting alphafold ID
2021-09-14 Jim ProcterJAL-3855 detect an alphafold model and import its tempe...
2021-09-14 Jim ProcterJAL-3829 move mock query and responses to files
2021-09-14 Ben SoaresJAL-2422 Also look in ~/Applications for ChimeraX on...
2021-09-14 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3...
2021-09-14 Jim ProcterMerge branch 'feature/JAL-2422ChimeraX' into develop
2021-09-14 Jim ProcterJAL-3829 3d-beacons doesn’t work as a sequence source...
2021-09-14 Jim ProcterJAL-3829 avoid sending rubbish to PDBe search api
2021-09-14 Jim ProcterJAL-3829 some providers don’t provide model quality...
2021-09-14 Jim ProcterJAL-3829 allow multiple URL mocks and include P01308...
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-09-14 Ben SoaresJAL-2422 Fixed URL encoding of REST calls (broken paths...
2021-09-13 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2021-09-13 Ben SoaresJAL-2422 Fixed URL encoding of REST calls (broken paths...
2021-09-13 Ben SoaresMerge branch 'develop' into feature/JAL-2422ChimeraX
2021-09-13 Jim ProcterMerge branch 'releases/Release_2_11_2_Branch' into...
2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
2021-09-13 Jim ProcterJAL-3829 ensure unmock the FTS PDB and TDB clients...
2021-09-13 Ben SoaresJAL-2422 Added linux rpm and deb install locations...
2021-09-13 Jim ProcterJAL-3829 minimal test of additional TDB filters - not...
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select...
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches
2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...
2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper excep...
2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri...
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec
2021-09-10 Jim ProcterJAL-3829 point at production 3d-beacons url
2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab...
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures...
2021-09-08 Jim ProcterJAL-3829 JAL-3868 TODO
2021-09-08 Jim ProcterJAL-3829 formatting
2021-09-08 Jim ProcterJAL-3829 integration test verifying mock response is...
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata...
2021-09-06 Jim ProcterJAL-3829 look up column in FTS data
2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to Unipro...
2021-09-06 Jim ProcterJAL-3829 pull out structure chooser query source tests...
2021-09-03 Jim ProcterJAL-3829 JAL-3865 test structure chooser queries to...
2021-09-03 Jim ProcterJAL-3829 use sequence dependent constructor for structu...
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to...
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial...
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query...
2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession...
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement...
2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository...
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct...
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3...
2021-09-02 Jim ProcterMerge branch 'cherry-pick/r2_11_2_JAL-3509' into develop
2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature...
2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of...
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code
2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu...
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2021-08-30 Jim ProcterJAL-3863 fix test and note about fragility
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism...
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot...
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and...
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import...
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet...
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts...
2021-08-30 Jim ProcterJAL-3829 updated tests for 3db fetcher’s working FTS...
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher...
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval...
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for...
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio...
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC...
2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses...
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new...
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core
2021-08-30 arngucciJAL-3829_spike minor changes
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters
2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spik...
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy
2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for...
2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS...
2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB...
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using...
2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model...
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