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jalview.git
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature... commit | commitdiff | tree | snapshot
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-10-26 gmungocJAL-2792 html table for Feature Details report commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2392 test asserts for progressbar creation on the... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2617 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2636 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2667 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2727 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2727 add not to Test failed message recommending... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2732 JAL-1900 JAL-1625 release notes commit | commitdiff | tree | snapshot
2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bugs/JAL-2779_osx_dialogsequencingbroke... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2779 remove empty block and if statement commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2790 JAL-2392 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2392 auto boxing rather than explicit Long as key commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2495 release notes commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2495 highlight all mapped sequences from structure... commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2643 JAL-2524 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2524 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2733 JAL-2658 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-1980 release notes (retrodoc for 2.10.0) commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2687 JAL-2608 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl... commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2542 release notes commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-1739 Javadoc updated for Lambda expression parser... commit | commitdiff | tree | snapshot
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and... commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2768 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2739 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2682 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2253 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-2737 JAL-1854 corrected package suppressions, updat... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not neede... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 PID script in release notes commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score... commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2755 update caller for method rename! commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2609 adjustments for test findings commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 put chromosomal dbref first in report commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add lookup of cds/cdna gene loci commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add species lookup commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add missing Javadoc commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 rename EnsemblInfo as EnsemblData, add 'true... commit | commitdiff | tree | snapshot
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignmen... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 remove dead code commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe... commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2777 JAL-2773 release notes commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop commit | commitdiff | tree | snapshot
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 release notes commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterMerge branch 'features/JAL-2773_dontalwaysrecolourstruc... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour... commit | commitdiff | tree | snapshot
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of... commit | commitdiff | tree | snapshot
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tests updated for revised label width commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns... commit | commitdiff | tree | snapshot
2017-10-11 Jim ProcterJAL-2757 release notes commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 minor test updates following review commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2738 javadoc correction commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2609attemptedmerge tidy commit | commitdiff | tree | snapshot
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