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jalview.git
2017-08-14
Jim Procter
JAL-2663 source formatting
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2017-08-13
TZVanaalten
JAL-2629 fix issue where trim termini setting would...
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2017-08-13
TZVanaalten
JAL-2629 hmmalign can now be run from the sequence...
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2017-08-13
TZVanaalten
JAL-2629 add force alphabet type for HMMER commands
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2017-08-13
TZVanaalten
JAL-2629 fix issue where HMM sequences would be too...
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2017-08-13
TZVanaalten
JAL-2629 add HMMER tab in preferences menu
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2017-08-11
TZVanaalten
JAL-2629 delete unnecessary buffer files for hmmer...
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2017-08-11
TZVanaalten
JAL-2629 add ability to build a HMM from a group
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2017-08-11
TZVanaalten
JAL-2629 add ability to select HMMs
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2017-08-11
TZVanaalten
JAL-2599 HMMs can now be dropped onto the desktop
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2017-08-10
Jim Procter
Merge branch 'patch/JAL-2116_java9' into releases/Relea...
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2017-08-10
Jim Procter
JAL-2116 try '=' syntax jigsaw-dev.1059479.n5.nabble...
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2017-08-10
Jim Procter
Merge branch 'patch/JAL-2116_java9' into releases/Relea...
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2017-08-10
Jim Procter
JAL-2116 test java 9 only JNLP launch
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2017-08-10
Jim Procter
Merge branch 'patch/JAL-2116_java9' into releases/Relea...
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2017-08-10
Jim Procter
JAL-2116 explicit replace j2se element with a java9...
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2017-08-10
TZVanaalten
JAL-2629 hmmalign now correctly creates a new frame
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2017-08-10
Jim Procter
Merge branch 'patch/JAL-2116_java9' into releases/Relea...
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2017-08-10
Jim Procter
JAL-2116 java9 modules dependency for JNLP file
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2017-08-10
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2017-08-10
gmungoc
JAL-2660 used saved value of ignoreGapsInConsensus...
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2017-08-10
tzvanaalten
Merge branch 'features/hmmer' of https://source.jalview...
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2017-08-10
tzvanaalten
JAL-2629 fix files permission issue on Mac
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2017-08-10
Jim Procter
Merge branch 'develop' into releases/Release_2_10_2_Branch
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2017-08-10
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-10
Jim Procter
JAL-2418 set final release date to 15th August 2017...
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2017-08-10
Jim Procter
JAL-2418 typo in release notes
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2017-08-10
Jim Procter
JAL-2418 known defect for JAL-2321 in release notes
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2017-08-10
Jim Procter
JAL-2418 reorganised release notes to topic sections...
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2017-08-09
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-09
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-09
Jim Procter
JAL-2418 JAL-2398 JAL-2397 simpler documentation for...
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2017-08-09
Jim Procter
Merge branch 'develop' into releases/Release_2_10_2_Branch
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2017-08-09
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-09
Jim Procter
JAL-2397 JAL-2398 documentation for reinstating legacy...
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2017-08-09
Jim Procter
JAL-2426 Rfam download suffix
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2017-08-09
Jim Procter
JAL-2426 JAL-1270 report Xfam download URL used if...
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2017-08-09
Jim Procter
JAL-2425 raw stockholm download URLs
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2017-08-09
Jim Procter
JAL-1270 testProps should also enable debug logging
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2017-08-09
Jim Procter
JAL-2425 test for alignment metadata retrieved from...
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2017-08-09
Jim Procter
JAL-2425 remove overloaded getSequenceRecords method...
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2017-08-09
TZVanaalten
JAL-2599 fix for issue where info annot would not display
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2017-08-09
tzvanaalten
JAL-2599 fix for issue where info annot would not display
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2017-08-09
Jim Procter
JAL-2418 release notes
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2017-08-09
TZVanaalten
JAL-2599 add uniref 50 hmm example
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2017-08-09
TZVanaalten
JAL-2629 buffers are now temporary files
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2017-08-09
TZVanaalten
JAL-2629 removed unnecessary exception throws from...
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2017-08-09
TZVanaalten
JAL-2629 disable AAFrequencyTest compilation error
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2017-08-09
Jim Procter
JAL-2418 more release notes
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2017-08-09
Jim Procter
JAL-2418 JAL-2611 and rejigged overview documentation
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2017-08-09
Jim Procter
Merge branch 'bug/JAL-2634' into develop
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2017-08-09
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-08
TZVanaalten
JAL-2616 fix allowing clan sorting to work
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2017-08-08
TZVanaalten
JAL-2599 fix for index issue on node lookup
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2017-08-08
TZVanaalten
JAL-2629 add ability to select hmmer binaries folder
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2017-08-08
gmungoc
JAL-2560 alternative fix (reinstate lost line of code)
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2017-08-08
gmungoc
JAL-2649 JAL-2650 wait for Conservation calc to complet...
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2017-08-08
gmungoc
JAL-2650 configure new viewport settings before selecti...
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2017-08-07
TZVanaalten
JAL-2629 fixed hmmalign failing due to differing sequen...
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2017-08-07
TZVanaalten
JAL-2629 current hmmer commands are now executed in...
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2017-08-07
Jim Procter
Merge branch 'bug/JAL-2592userDefinedScheme' into develop
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2017-08-07
Jim Procter
Merge branch 'develop' into releases/Release_2_10_2_Branch
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2017-08-07
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-07
Jim Procter
JAL-2418 JAL-2468 known issue
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2017-08-07
Jim Procter
JAL-2482 JAL-2487 documented in release notes
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2017-08-07
Jim Procter
JAL-2482 release notes
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2017-08-07
Jim Procter
JAL-2418 release notes formatting
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2017-08-07
Jim Procter
JAL-2418 release notes
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2017-08-07
Jim Procter
JAL-2418 typo and formatting of search.html
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2017-08-07
Jim Procter
JAL-1648 documentation of search history for Find command
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2017-08-07
Jim Procter
JAL-2418 reformatting and scripting section in what...
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2017-08-07
Jim Procter
JAL-2418 release notes
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2017-08-07
Jim Procter
JAL-2418 formatting
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2017-08-07
Jim Procter
JAL-1476 JAL-2418 insufficient columns for superpositio...
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2017-08-04
TZVanaalten
JAL-2599 fixed information annotation buttons not working
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2017-08-04
TZVanaalten
JAL-2629 hmmbuild now runs on alignments of different...
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2017-08-04
TZVanaalten
JAL-2629 multiple HMMs can now be dropped onto an alignment
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2017-08-04
Jim Procter
JAL-2418 JAL-1632 JAL-2416 calculations dialog document...
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2017-08-04
Jim Procter
JAL-2418 new features in release notes JAL-1933 JAL...
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2017-08-04
Jim Procter
JAL-2418 release notes
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2017-08-04
Jim Procter
JAL-1551 JAL-2418 reformat releases.html to remove...
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2017-08-04
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-04
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-04
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_rele...
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2017-08-04
gmungoc
JAL-2500 JAL-2365 lightGray changed to lightgray for...
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2017-08-04
gmungoc
JAL-2500 JAL-2365 lightGray changed to gray in example...
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2017-08-03
Jim Procter
Merge branch 'develop' into releases/Release_2_10_2_Branch
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2017-08-03
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-03
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_rele...
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2017-08-03
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2017-08-03
Jim Procter
JAL-2418 what’s new - faster PCA, calculations UI and...
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2017-08-03
Jim Procter
JAL-2418 release notes
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2017-08-03
Jim Procter
JAL-1551 updated source code formatting settings from...
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2017-08-03
gmungoc
JAL-2500 JAL-2365 feature colour "gray" _not_ "lightgra...
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2017-08-03
gmungoc
JAL-2500 JAL-2365 lightGray changed to lightgray for...
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2017-08-03
gmungoc
JAL-2500 JAL-2365 lightGray changed to gray in example...
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2017-08-03
gmungoc
JAL-2435 test for 'mirror font' option visible (not...
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2017-08-03
Jim Procter
Merge branch 'bug/JAL-2591overviewupdate' into develop
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2017-08-02
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-08-02
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_rele...
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