jalview.git
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures...
2016-06-01 Jim ProcterMerge branch 'testfix/JAL-2038' into develop
2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher
2016-06-01 Jim ProcterJAL-2038 ensure bare Strings are lowercased before...
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation
2016-06-01 gmungocJAL-1424 clearer messaging
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used...
2016-06-01 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-06-01 Jim Procterfix build
2016-05-31 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc
2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their...
2016-05-31 tcofoegbumerge
2016-05-31 tcofoegbuJAL-1563 minor user doc update
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced...
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame...
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version...
2016-05-31 Jim ProcterMerge branch 'features/JAL-2113_emblXml1.2' into develop
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections...
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label...
2016-05-30 tcofoegbuJAL-2038 fix to enable case-insensitive file name ...
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin...
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to...
2016-05-30 Jim ProcterJAL-2077 release notes
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD...
2016-05-30 Jim ProcterJAL-1551 formatting
2016-05-30 Jim ProcterJAL-2089 update release date for 2.9.1
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example...
2016-05-30 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match...
2016-05-30 gmungocJAL-2119 help links checker added to /utils
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin...
2016-05-30 gmungocJAL-2119 updated Valdar group link
2016-05-29 gmungocJAL-2119 fixes for broken links in help files
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection...
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to...
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each...
2016-05-27 tcofoegbumerge
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification...
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save...
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed...
2016-05-27 gmungocJAL-1911 correct typo in field name
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text...
2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere...
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-26 Jim ProcterJAL-2121 refactor todo
2016-05-26 gmungocJAL-391 add reverse / complement to command history...
2016-05-26 gmungocJAL-2035 relocated a comment
2016-05-26 Jim ProcterJAL-2089 update developer doc
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-05-26 Jim ProcterJAL-1400 JAL-2089 allow configurable signature algorithms
2016-05-26 Jim ProcterJAL-1551 formatting
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander
2016-05-26 gmungocJAL-1670 add non-positional feature with link to demons...
2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences'
2016-05-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1919 JAL-1479 user help docs
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop...
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-26 gmungocJAL-1797 non-case-sensitive counting of residues /...
2016-05-26 gmungocJAL-2008 drag to reorder features not available in...
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain
2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor
2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling...
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature...
2016-05-23 gmungocJAL-2113 tidy variable naming / javadoc
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove...
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2113_emblXml1.2
2016-05-20 gmungocJAL-2114 explicit invalid test cases added
2016-05-20 gmungocJAL-2113 corrected test to use valid location syntax
2016-05-20 gmungocJAL-2113 removed classes deleted from mapping
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL...
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format
2016-05-20 gmungocJAL-2115 updated web link for MAFFT (and one typo)
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature...
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors
2016-05-18 tcofoegbumerge
2016-05-18 tcofoegbuJAL-1563 User documentation for Uniprot FTS
2016-05-18 tcofoegbuJAL-1563 smarter support for advanced querying of Unipr...
2016-05-18 gmungocJAL-2049 set sequence feature group to "Jalview" for...
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue
2016-05-17 tcofoegbuJAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
2016-05-17 tcofoegbumerge
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated...
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly
2016-05-11 tcofoegbuJAL-1563 updated uniprot FTS config file
2016-05-09 tcofoegbumerge
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
2016-05-09 tcofoegbuJAL-2102 implemented improvement to round FTS's numberi...
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