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jalview.git
2016-10-01 Jim ProcterJAL-2210 refactor code to remove from a list of dbrefs... commit | commitdiff | tree | snapshot
2016-09-30 Jim ProcterJAL-2210 some DBRef xref/ref correspondences may add... commit | commitdiff | tree | snapshot
2016-09-30 Jim ProcterJAL-2210 CrossRef.findInDataset should search for prese... commit | commitdiff | tree | snapshot
2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2210 patch network test for additional refs commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2210 JAL-2235 fix deriveSequence test for tightened... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-1270 read test props before manipulating config... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2235 implicit test to check that exception is raise... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2235 raise exceptions if self reference or referenc... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2210 instrument setDBRefs to call ensurePrimaries commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2210 JAL-2232 check response code before attempting... commit | commitdiff | tree | snapshot
2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot... commit | commitdiff | tree | snapshot
2016-09-27 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro... commit | commitdiff | tree | snapshot
2016-09-27 Jim ProcterJAL-2210 formatting commit | commitdiff | tree | snapshot
2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions commit | commitdiff | tree | snapshot
2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources... commit | commitdiff | tree | snapshot
2016-09-27 Jim ProcterJAL-2210 resolve todo - addDBRef adds to dataset sequen... commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progres... commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2230 JAL-2049 added sequence feature transfer to commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2230 use correct mapping to transfer features to... commit | commitdiff | tree | snapshot
2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop commit | commitdiff | tree | snapshot
2016-09-24 Jim ProcterJAL-1919 whats new link commit | commitdiff | tree | snapshot
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation... commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structu... commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1957 release notes commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1962 release notes commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair... commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-2189 JAL-1479 JAL-1491 JAL-1827 release notes commit | commitdiff | tree | snapshot
2016-09-23 gmungocJAL-2214 Javadoc commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2275 release notes commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2151 release notes commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-1421 use declared type of ResidueProperties.propHash commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2168 -news release notes commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-1557 release notes commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 bumped date to 27th September \o/ commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy docs (new files... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-2092 popup show/hide cols with feature... commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalize call super.finalize() commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalise corrected to finalize commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-2077 note about CTRL-Click to right click... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 tidy up docs commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalize() refactored so not called programmat... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-1812 JAL-1868 release notes commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 new dispose() method to null references commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and... commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalize call super.finalize() commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus docum... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2189 reworked annotation docs commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch commit | commitdiff | tree | snapshot
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-1577 release notes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2027 releasenotes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-1563 release notes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documen... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq document... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-2118 reorder annotations after add/delete/hide... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... commit | commitdiff | tree | snapshot
2016-09-19 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-1353 small tidy of test commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-1270 use test properties file commit | commitdiff | tree | snapshot
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2189 clear out old what’s new and add ensembl and... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2189 JAL-1705 JAL-1795 ensembl fetching docs commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2089 tidied docs for sequence fetcher
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2016-09-16 Jim ProcterJAL-2089 release notes commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2089 zero day for 2.10 - 20th Sep 2016 commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterMerge branch 'patch/JAL-2164_updatesRESNUMtests' into... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2183 don't open two free text panels; give input... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2183 avoid duplicate closeDialog() commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test... commit | commitdiff | tree | snapshot
2016-09-14 Jim ProcterJAL-2164 create RESNUM features with padding the same... commit | commitdiff | tree | snapshot
2016-09-14 Jim ProcterJAL-2168 simpler help text re -nonews commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled PDB file parser configuratio... commit | commitdiff | tree | snapshot
2016-09-13 Jim ProcterJAL-2119 keeping gmungoc happy by not running linkcheck... commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB... commit | commitdiff | tree | snapshot
2016-09-13 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-13 gmungocJAL-1803 tests added for PDBEntry.Type commit | commitdiff | tree | snapshot
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser... commit | commitdiff | tree | snapshot
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