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jalview.git
2007-04-26 jprocteradded 'sort by sequence associated annotation score' commit | commitdiff | tree | snapshot
2007-04-26 jprocterbug fixed basic score extraction by regex on descriptio... commit | commitdiff | tree | snapshot
2007-04-26 jprocterget annotation by label string commit | commitdiff | tree | snapshot
2007-04-26 jprocterfix '\0' bug from score-only positional annotation commit | commitdiff | tree | snapshot
2007-04-26 jprocterscore is a double, fix bugs for score only annotation... commit | commitdiff | tree | snapshot
2007-04-26 jprocterdouble sort functions commit | commitdiff | tree | snapshot
2007-04-26 jproctertotal annotation score is a double for maximum precision. commit | commitdiff | tree | snapshot
2007-04-26 amwaterhousecheck for null ss character commit | commitdiff | tree | snapshot
2007-04-26 amwaterhousecolourText = false commit | commitdiff | tree | snapshot
2007-04-26 jprocterscore and visible copy construction commit | commitdiff | tree | snapshot
2007-04-26 amwaterhouseEdit seqs commit | commitdiff | tree | snapshot
2007-04-26 jprocterquick fix for verbose fortranesque comments in preamble... commit | commitdiff | tree | snapshot
2007-04-26 jprocterfixed bug in prefix extraction for application commit | commitdiff | tree | snapshot
2007-04-26 jprocterbasic methods for adding scores extracted from description commit | commitdiff | tree | snapshot
2007-04-26 jprocterfix for null annotations commit | commitdiff | tree | snapshot
2007-04-26 jproctergroovy support without compile-time dependency. commit | commitdiff | tree | snapshot
2007-04-26 amwaterhouseremove should be removeElement commit | commitdiff | tree | snapshot
2007-04-26 amwaterhouseAlignment Properties required for annotation file commit | commitdiff | tree | snapshot
2007-04-25 jproctermoving word methods to MapList and begin bug-fix for... commit | commitdiff | tree | snapshot
2007-04-25 jproctergetContentPane().add alignmentProperties popup. commit | commitdiff | tree | snapshot
2007-04-25 amwaterhouseproperties + colours commit | commitdiff | tree | snapshot
2007-04-25 amwaterhouseShow scores commit | commitdiff | tree | snapshot
2007-04-25 amwaterhouseExport annotations with properties commit | commitdiff | tree | snapshot
2007-04-25 amwaterhouseView Properties commit | commitdiff | tree | snapshot
2007-04-25 amwaterhousefix recent file type bug commit | commitdiff | tree | snapshot
2007-04-25 amwaterhousealignmentProperties added commit | commitdiff | tree | snapshot
2007-04-25 jprocterFunctions for parsing free text properties on sequences... commit | commitdiff | tree | snapshot
2007-04-25 jproctertransfer of residue numbering as alignment annotation commit | commitdiff | tree | snapshot
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute... commit | commitdiff | tree | snapshot
2007-04-24 jprocterbugfix for sequence features mapped to multiple contigs... commit | commitdiff | tree | snapshot
2007-04-24 jprocterupdated mapping for EMBL_Services_V1.1.xsd and tested... commit | commitdiff | tree | snapshot
2007-04-23 jprocterfunctions that operate on references to sequences in... commit | commitdiff | tree | snapshot
2007-04-23 jprocterdistinct methods for getting references to selected... commit | commitdiff | tree | snapshot
2007-04-23 amwaterhousegetColour method added commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseCheck for null displayCharacters commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseDbref fetcher takes sequences, not alignment commit | commitdiff | tree | snapshot
2007-04-23 amwaterhousegetColour added to structures commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseTest out new arrangement commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseGet colour from structure added commit | commitdiff | tree | snapshot
2007-04-23 amwaterhousecheck dispalyChar is not null commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseCheck displayChar is not null commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseColour is null commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseremove seqref annotations commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseremove alignmentAnnotation added commit | commitdiff | tree | snapshot
2007-04-23 amwaterhouseOnly fetch refs for seelcted sequences commit | commitdiff | tree | snapshot
2007-04-20 jprocterfix null annotation values commit | commitdiff | tree | snapshot
2007-04-20 jprocterglobal dbref fetch option in web services menu. commit | commitdiff | tree | snapshot
2007-04-20 jproctervalue only annotation commit | commitdiff | tree | snapshot
2007-04-20 jprocteradds annotation for display (with flag to set alignment... commit | commitdiff | tree | snapshot
2007-04-20 jprocterannotation and seqs vectors are protected members for... commit | commitdiff | tree | snapshot
2007-04-19 jproctertfactor annotation description includes full sequenceID commit | commitdiff | tree | snapshot
2007-04-19 jproctertfactor and occupancy extracted from PDB file, and... commit | commitdiff | tree | snapshot
2007-04-19 jprocterbugfix commit | commitdiff | tree | snapshot
2007-04-19 jprocterfixed column selection cut/paste and self paste. commit | commitdiff | tree | snapshot
2007-04-19 jproctersequence associated alignment annotation copy for colum... commit | commitdiff | tree | snapshot
2007-04-19 jprocterensure edit command gapChar is updated and used for... commit | commitdiff | tree | snapshot
2007-04-19 jprocterpadGaps flag in copy constructor commit | commitdiff | tree | snapshot
2007-04-19 jprocterjavadoc note on padding AlignmentAnnotation to alignmen... commit | commitdiff | tree | snapshot
2007-04-19 jproctercopying sequenceMapping, restrict(alstart/end) and... commit | commitdiff | tree | snapshot
2007-04-19 amwaterhouseREPLACE added to edit command commit | commitdiff | tree | snapshot
2007-04-19 amwaterhouseOnly setDropTarget if Desktop is not null commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseValidate range for all annotations commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseRedundant code commented out commit | commitdiff | tree | snapshot
2007-04-18 amwaterhousehastext = false commit | commitdiff | tree | snapshot
2007-04-18 amwaterhousedont set seqref null if index incorrect commit | commitdiff | tree | snapshot
2007-04-18 amwaterhousefeatureGroups not null commit | commitdiff | tree | snapshot
2007-04-18 amwaterhousePad gaps when annotation editing commit | commitdiff | tree | snapshot
2007-04-18 amwaterhousequality has text false commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseQuality does not have text commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseAlignment of labels and text commit | commitdiff | tree | snapshot
2007-04-18 amwaterhousechecks for scrollbar height commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseDisable memory checker for now commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseadjustForAlignment on new seq ref commit | commitdiff | tree | snapshot
2007-04-18 amwaterhouseCheck values not null in copy constructor commit | commitdiff | tree | snapshot
2007-04-18 jproctermade compileApplet and obfuscate depend on the presence... commit | commitdiff | tree | snapshot
2007-04-18 jprocterjava 1.1 compliance commit | commitdiff | tree | snapshot
2007-04-17 jprocterbugfix for jalviewApplet run from command line. commit | commitdiff | tree | snapshot
2007-04-17 jprocterbugfix. commit | commitdiff | tree | snapshot
2007-04-17 jprocterjmol lib dependency for proguard and castorbinding... commit | commitdiff | tree | snapshot
2007-04-17 jprocteruse of suffix string (filename.blc#suffixstring) to... commit | commitdiff | tree | snapshot
2007-04-17 jprocterrefactored to allow seeks on a FileParse datasource... commit | commitdiff | tree | snapshot
2007-04-17 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-04-17 jprocterascii type commit | commitdiff | tree | snapshot
2007-04-17 jprocterpaste adds or creates full copies of objects in clipboa... commit | commitdiff | tree | snapshot
2007-04-17 jprocterpdb files are global to all alignments with new mapping... commit | commitdiff | tree | snapshot
2007-04-17 jprocterpaste/cut now adds or removes associated AlignmentAnnot... commit | commitdiff | tree | snapshot
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef... commit | commitdiff | tree | snapshot
2007-04-17 jproctercopy constructor and ascii type change. commit | commitdiff | tree | snapshot
2007-04-17 jprocterproper copy constructor (not clone) commit | commitdiff | tree | snapshot
2007-04-17 amwaterhouseApplet remembers PDBEntries, can launch multiple struct... commit | commitdiff | tree | snapshot
2007-04-17 amwaterhouseAdd system.out for Mcview / Jmol detection commit | commitdiff | tree | snapshot
2007-04-17 amwaterhouseRemove system.out commit | commitdiff | tree | snapshot
2007-04-16 amwaterhousedrawSequence must be synchronized commit | commitdiff | tree | snapshot
2007-04-16 amwaterhouseToo many calls to paintAlignment commit | commitdiff | tree | snapshot
2007-04-13 amwaterhouseFeatureRenderer takes alignmentPanel commit | commitdiff | tree | snapshot
2007-04-13 amwaterhouseCheck alignment has same sequence commit | commitdiff | tree | snapshot
2007-04-12 jprocterbasic support for multi-exon CDS features commit | commitdiff | tree | snapshot
2007-04-12 amwaterhouseNumber pad keys can be used in cursor mode commit | commitdiff | tree | snapshot
2007-04-11 amwaterhouseSetTargetColour before dialog.show commit | commitdiff | tree | snapshot
2007-04-11 amwaterhouseModified to compile applet with Jmol jar present commit | commitdiff | tree | snapshot
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