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jalview.git
2024-05-14 Ben SoaresJAL-1054 Tests for the HttpUtils redirection wrappers commit | commitdiff | tree | snapshot
2024-05-14 Ben SoaresMerge branch 'bug/JAL-4397_failing_idWidth_tests' into... commit | commitdiff | tree | snapshot
2024-05-14 Ben SoaresMerge branch 'develop' into bug/JAL-4397_failing_idWidt... bug/JAL-4397_failing_idWidth_tests commit | commitdiff | tree | snapshot
2024-05-14 Ben SoaresJAL-4414 Add a FileNotFoundException when identifying... commit | commitdiff | tree | snapshot
2024-05-14 Jim ProcterJAL-4356 fix release note commit | commitdiff | tree | snapshot
2024-05-14 Jim ProcterJAL-4356 set release date to Weds 15th May and update... commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterJAL-4356 JAL-518 JAL-4413 release notes commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterMerge branch 'features/JAL-518_justify_seqs_in_region... commit | commitdiff | tree | snapshot
2024-05-13 Ben SoaresJAL-1054 Fix wrappers for following http->https redirects commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterJAL-518 better test coverage and support for case prese... features/JAL-518_justify_seqs_in_region commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterJAL-518 failing test for case preservation on justify commit | commitdiff | tree | snapshot
2024-05-13 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem... commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterJAL-4413 timeouts Merge branch 'improvement/JAL-4217_ad... commit | commitdiff | tree | snapshot
2024-05-13 Ben SoaresJAL-4409 Fix some file extensions (including remove... commit | commitdiff | tree | snapshot
2024-05-13 Ben SoaresJAL-1054 Add wrappers for URL.openConnection(), URL... commit | commitdiff | tree | snapshot
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... commit | commitdiff | tree | snapshot
2024-05-10 Ben SoaresJAL-4409 Add jalviewhttp and jalviewhttps schemes to... commit | commitdiff | tree | snapshot
2024-05-02 Ben SoaresJAL-4217 Sensible timeout for testTask0 commit | commitdiff | tree | snapshot
2024-05-02 Ben SoaresJAL-4217 Added a timeout for testTasks. If timeout... commit | commitdiff | tree | snapshot
2024-04-27 Ben SoaresJAL-4397 Removed debugging statement commit | commitdiff | tree | snapshot
2024-04-26 Ben SoaresJAL-4397 Adjustments for macOS HiDPI commit | commitdiff | tree | snapshot
2024-04-26 Ben SoaresJAL-4397 Test all fixed on linux. Given leeway to... commit | commitdiff | tree | snapshot
2024-04-22 Ben SoaresJAL-4397 Allow some leeway in automatically calculated... commit | commitdiff | tree | snapshot
2024-04-18 Ben SoaresJAL-4397 fixed testresetIdWidth() test on macos commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4356 release notes commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4356 update release notes for 2.11.3.3 commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4290 fixed tests commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4353 singleThread all tests commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4368_default_colourscheme_applied... commit | commitdiff | tree | snapshot
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch commit | commitdiff | tree | snapshot
2024-01-19 Ben SoaresJAL-4373 Fix Main-Class and other attribute settings... commit | commitdiff | tree | snapshot
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately commit | commitdiff | tree | snapshot
2023-12-19 Ben SoaresJAL-4290 Fixed one test commit | commitdiff | tree | snapshot
2023-12-18 Ben SoaresJAL-4290 not quite working tests commit | commitdiff | tree | snapshot
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main() commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... commit | commitdiff | tree | snapshot
2023-12-15 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_figure_wi... commit | commitdiff | tree | snapshot
2023-12-15 James ProcterJAL-4290 new CommandsTest.headlessOrGuiImageOutputTest... bug/JAL-4290_headless_alignment_figure_with_sse commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4356 update release notes commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4217 singleThread all tests commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 bigger tighter test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 failing test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files... commit | commitdiff | tree | snapshot
2023-12-11 James ProcterJAL-4192 more specific info about versions needed commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 re-used random color code commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 bump RELEASE commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... commit | commitdiff | tree | snapshot
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA... commit | commitdiff | tree | snapshot
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version... commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4351 update release notes for JAL-4342 commit | commitdiff | tree | snapshot
2023-11-30 James ProcterMerge branch 'patch/JAL-4342_emptyannotationsexport... commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport commit | commitdiff | tree | snapshot
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4351 2.11.3.2 scheduled for 1st December release commit | commitdiff | tree | snapshot
2023-11-30 James ProcterMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... commit | commitdiff | tree | snapshot
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterJAL-4343 fix insufficient-caffeine error - add whats... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterJAL-4343 release today, update notes for JAL-4348 and... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterMerge branch 'patch/JAL-4345_pae_epas1_doubleclick... commit | commitdiff | tree | snapshot
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick commit | commitdiff | tree | snapshot
2023-11-20 Ben SoaresJAL-4348 Add newer versions of Chimera and ChimeraX... commit | commitdiff | tree | snapshot
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature... commit | commitdiff | tree | snapshot
2023-11-17 James ProcterJAL-4343 release notes for JAL-4340 and JAL-4243 commit | commitdiff | tree | snapshot
2023-11-17 James ProcterJAL-4343 bump version commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresJAL-4243 Updated bio.tools record for 2.11.3.0 commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresJAL-4340 Change launch scripts to be xresources to... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 JAL-4334 patch in release notes commit | commitdiff | tree | snapshot
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport... commit | commitdiff | tree | snapshot
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