jalview.git
2019-10-03 Jim ProcterJAL-3070 call checkDone() ASAP to avoid race condition...
2019-10-02 Jim ProcterJAL-3070 decouple WsMenuEntryProviderI code from JABAWS
2019-10-02 Jim ProcterJAL-3070 reorganise prior to refactor
2019-10-02 Jim ProcterJAL-3070 make AlignCalcUI service code work only with...
2019-10-02 Jim ProcterJAL-3070 discoverers return ServiceWithParameter, now...
2019-10-02 Jim ProcterJAL-3070 decontaminate the ‘preferred service’ methods...
2019-10-02 Jim ProcterJAL-3070 JAL-3062 tidy up slivka ws menu builder and...
2019-10-02 Jim ProcterJAL-3070 detect failed/broken annotation web service...
2019-10-02 Jim ProcterJAL-3070 pull up generic methods for an automatic align...
2019-10-02 Jim ProcterJAL-3070 TODO
2019-10-01 Mateusz WarownyJAL-3066 Sequence annotation services.
2019-09-27 Mateusz WarownyJAL-3066 Automatically discoverable Protein sequence...
2019-09-27 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi...
2019-09-26 Jim ProcterJAL-3070 oops - refactor Slivka’s service stub too :)
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-3067 refactor annotation web...
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-2808 allow feature filter definit...
2019-09-26 Jim ProcterJAL-3070 allow SequenceI.findPositions(0,column+1)...
2019-09-26 Jim ProcterJAL-3070 cope when dataset sequence is passed
2019-09-26 Jim ProcterJAL-3070 JAL-3066 formatting
2019-09-26 Jim ProcterJAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(Alignm...
2019-09-24 Jim ProcterJAL-3070 tidying
2019-09-23 Jim ProcterJAL-3066 JAL-3070 pull up non-jabaws specific service...
2019-09-23 Mateusz WarownyJAL-3066 Annotation Service Instance stub
2019-09-23 Mateusz WarownySlivkaWSDiscoverer formatting fix
2019-09-23 Mateusz WarownyJAL-3066 Move common web service methods to abstract...
2019-09-23 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
2019-09-23 Jim ProcterJAL-3070 configure annotation service manager from...
2019-09-23 Jim ProcterJAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation...
2019-09-23 Jim ProcterJAL-3070 ensure RNAAliFold annotation rows display...
2019-09-23 Jim ProcterJAL-3070 formatting
2019-09-23 Jim ProcterJAL-3070 detect presence of existing JABA RNAAliFold...
2019-09-23 Jim ProcterJAL-3070 match AbstractJabaCalcWorker’s annotation...
2019-09-23 Jim ProcterJAL-3070 javadoc for (mostly) jabaws specific methods
2019-09-20 Jim ProcterJAL-3070 rough-and-ready refactor of JABA SequenceAnnot...
2019-09-20 Jim ProcterJAL-3070 JAL-1379 deferred work on annotation based...
2019-09-20 Jim ProcterJAL-3070 JAL-2507 fix up test output and honour the...
2019-09-19 Mateusz WarownyJAL-3066 Auto discover multiple sequence alignment...
2019-09-17 Jim ProcterJAL-3432 hide the slider when validator has no min...
2019-09-16 Mateusz WarownySet the initial value of the choice field to the defaul...
2019-09-16 Mateusz WarownyAdd the remaining msa services to the Discoverer
2019-09-11 Mateusz WarownyChange choice field to use dropbox instead of radio...
2019-09-11 Mateusz WarownyCreate generic msa service instance
2019-09-06 Mateusz WarownyMerge remote-tracking branch 'origin/alpha/JAL-3066_Jal...
2019-09-06 Mateusz WarownyJAL-3066 Working custom parameters for clustalo
2019-09-06 Jim ProcterJAL-3066 fix compile error (@matesuz - this will confli...
2019-09-06 Jim ProcterJAL_1426 JAL-3066 update Apache James mime parser and...
2019-09-06 Mateusz WarownyJAL-1426 Replacing old apache-http jars.
2019-09-05 Mateusz WarownyJAL-3066 Implement clustaloWS using slivka system.
2019-08-13 Jim ProcterJAL-3362 keep Java 1.8 build happy by specifying generi...
2019-08-13 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans...
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename...
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'...
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId()
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless...
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to...
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight()
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe...
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
2019-07-26 gmungocJAL-1793 only decode specific special characters in...
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting...
2019-07-15 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-12 ThomasJAL-2629 can now choose number of jackhmmer iterations merge/JAL-3285_mchmmer_with_211_develop
2019-07-12 ThomasJAL-2629 fix faulty label in a MessageManager.getString...
2019-07-12 ThomasJAL-2629 add sort by evalue and bit score
2019-07-12 ThomasJAL-2629 hmmer searches now read domain rather than...
2019-07-11 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-11 ThomasJAL-2629 hmmer searches include seqs past inclusion...
2019-07-11 ThomasJAL-2629 hmm search UI and structural improvements...
2019-07-10 Jim ProcterJAL-3070 standard way of storing/recovering documentati...
2019-07-10 Jim ProcterJAL-3070 remove final reference to Jws2Instance
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer assigning incorrect...
2019-07-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
2019-07-10 tvaJAL-2629 fix hmsearch and jackhmmer not being able...
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel...
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel
2019-07-10 tvaJAL-2629 hmmsearch # of new sequences now only displaye...
2019-07-10 tvaJAL-2629 fix incorrect hmmbuild on groups behaviour
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel...
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel
2019-07-10 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer being unable to search...
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests
2019-07-05 tvaJAL-2629 uniquify all hmmer command sequence outputs
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant...
2019-07-05 tvaJAL-2629 fix file format issues preventing hmmsearch...
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt...
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute...
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown
2019-07-04 Jim ProcterMerge branch 'task/JAL-3337-rm-lib-update-sourceDist...
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