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jalview.git
2015-06-08 Jim ProcterJAL-1766 test and buggy implementation of fasta index... commit | commitdiff | tree | snapshot
2015-06-08 Jim ProcterJAL-1766 added a snapshot build of the htsjdk commit | commitdiff | tree | snapshot
2015-06-07 Jim ProcterJAL-429 remove pointless code from phylip parser features/JAL-653_rebased_gffalignments commit | commitdiff | tree | snapshot
2015-06-07 Jim ProcterJAL-653 test for GFF file recognition and alignment... commit | commitdiff | tree | snapshot
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format... commit | commitdiff | tree | snapshot
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF... commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support... commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 gff version number field commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with... commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 missing imports after rebase commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 test for SequenceDummy methods commit | commitdiff | tree | snapshot
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 Chimera command timeout increased to 5 secs... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 code tidy only, no functional change commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1749 correcting snafu in last commit commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 codon frames go on the dataset commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name... commit | commitdiff | tree | snapshot
2015-06-05 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-06-04 gmungocClear status bar message when initialisation complete commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit) commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1544 spelling in javadoc only commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix) commit | commitdiff | tree | snapshot
2015-06-04 gmungoctoString method added to aid viewing in the debugger commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1270 testToString added commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... commit | commitdiff | tree | snapshot
2015-06-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1641 added some JSON libraries to appletlib commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuclean up commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1756 fix failed test as a result of runing the... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1756 bug-fix commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbufixed bug in build.xml commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 updated build.xml commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 updated examples/applets.html commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 applet build fix commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'bug/JAL-1703_hint_select_by_annot' into... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1703 added tooltip hints to components of the Selec... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'bug/JAL-1734_misleading-progress-bar... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1734 updated progress bar messages commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuJAL-1748 house keeping commit | commitdiff | tree | snapshot
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 declare field with interface type; check for... commit | commitdiff | tree | snapshot
2015-05-29 Jim ProcterMerge branch 'JAL-1755_npe_groupconsensus' into develop commit | commitdiff | tree | snapshot
2015-05-29 Jim ProcterJAL-1755 fix for NPE when setting up temporary variables commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 Junit for new class commit | commitdiff | tree | snapshot
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 duplicated code refactored to new class Progre... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuMerge branch 'bug/JAL-1748_extend-pdb-query-opt' into... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuJAL-1748 and employ preprocessing routine when return... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuvalidate PDB selections on mouse release event commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1700 made PDB service error mechanism more user... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuMerge branch 'bug/JAL-1751_make-table-uneditable' into... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1751 provided method to overide isCellEditable... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuMerge branch 'bug/JAL-1749_reinstate-rna-viewing' into... commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1749 reinstated the ability to view RNA structures commit | commitdiff | tree | snapshot
2015-05-28 tcofoegbuJAL-1740 minor house keeping commit | commitdiff | tree | snapshot
2015-05-27 tcofoegbuRemoved redundant classes and dependencies pulled in... commit | commitdiff | tree | snapshot
2015-05-27 tcofoegbuMerge branch 'features/JAL-1740_Decoup-BioJS' into... commit | commitdiff | tree | snapshot
2015-05-27 tcofoegbuJAL-1740 updated synch codes to use a git repo rather... features/JAL-1740_Decoup-BioJS commit | commitdiff | tree | snapshot
2015-05-26 tcofoegbuJAL-1627 bug fix to remove wierd space in Sequence... commit | commitdiff | tree | snapshot
2015-05-25 tcofoegbubuild fix commit | commitdiff | tree | snapshot
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into... commit | commitdiff | tree | snapshot
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... commit | commitdiff | tree | snapshot
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