source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2005-06-08	jprocter	unterminated ul	commit \| commitdiff \| tree \| snapshot
2005-06-08	jprocter	nicer help.	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	Sets sequence features	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	spelling	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	Spelling	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	Formatted source	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	GPL	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	GPL license added	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	* empty log message *	commit \| commitdiff \| tree \| snapshot
2005-06-08	amwaterhouse	Add email to about	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	more truthful comment.	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	quickie build instructions.	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	very basic code convention. no licensing/stripping...	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	better code convention name	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	jalopy is used for sourcescrub target of build.xml...	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	removed signature for this jar	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	loads of changes. Jalopy source formatting, better...	commit \| commitdiff \| tree \| snapshot
2005-06-07	jprocter	added a couple of debug statements for unix browser...	commit \| commitdiff \| tree \| snapshot
2005-06-06	amwaterhouse	closes if accepted	commit \| commitdiff \| tree \| snapshot
2005-06-05	jprocter	made error for browser configuration on unix a bit...	commit \| commitdiff \| tree \| snapshot
2005-06-05	jprocter	firefox now default for unixen.	commit \| commitdiff \| tree \| snapshot
2005-06-05	jprocter	more subtle rearrangements	commit \| commitdiff \| tree \| snapshot
2005-06-03	jprocter	Reinstated 'create tree from selected region only'...	commit \| commitdiff \| tree \| snapshot
2005-06-02	jprocter	tidied the exceptions and ws server error behaviour	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	Menus	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	new	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	* empty log message *	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	Warn if URL not found	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	Cut and paste changed	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	Reverse order for windows, readin from url	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	startup file is jalview.org	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	Name of xml file changed	commit \| commitdiff \| tree \| snapshot
2005-06-02	amwaterhouse	Check startup file is not null	commit \| commitdiff \| tree \| snapshot
2005-06-02	jprocter	minor changes to make jalopy happy	commit \| commitdiff \| tree \| snapshot
2005-06-02	jprocter	minor changes to try and make jalopy happy	commit \| commitdiff \| tree \| snapshot
2005-05-31	jprocter	Moved comment so it doesn't break jalopy (this is not...	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	added the sorting entry to calculations, and corrected...	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	Changed sortByPID to use the gapped PID function.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	comments	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	Added clustalW 'realignment' (primitive)	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	added default ClustalWS or MuscleWS to remove gaps.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	propagated use of jalview.util.GapChars for gap removal.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	more robust parsing for DBset/DBname\|id1\|id2 type ids	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	modified history for redundancy removal.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	fixed stacktrace potential for pairwise alignment action.	commit \| commitdiff \| tree \| snapshot
2005-05-30	jprocter	Modified output on stdout for similarity matrix.	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	images moved	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	fixed brain interruption bug.	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	ignores blank lines read in and write out	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	right ordering for RedundancyPanel constructor	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	added proper state check for failedJob flag.	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Added jobFail state	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	better recognition of MSF files.	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Added menus	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	edits	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	image moved	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	pref	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	menus	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Image moved	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	identity changed	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Cut and paste menus added	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Cut and paste changes	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	C&P changes	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Check if colos are null	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Cut and paste changes	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Add cut and paste menus	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	CutAndPaste changed	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Added nicer header formatting for MSFfile output.	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	recovered changes from v 1.84	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Check if usrCol is null	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	New cut and paste	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Jpredfile now uses the PileUpfile io class.	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Addred GapChar string for convenient regex construction	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Response to bug mantis?id=8187 - some quick hacks to...	commit \| commitdiff \| tree \| snapshot
2005-05-27	amwaterhouse	Remove desc for conserve graph	commit \| commitdiff \| tree \| snapshot
2005-05-27	jprocter	Old MSF Format writer now renamed.	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	fixed use of PID rather than 'Comparison' Alignment...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	fairly pointless catch exception error information...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	fixed redundancy Undo and allowed it to work on UNALIGN...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	bug fix in jpred client. TreeViewer display state and...	commit \| commitdiff \| tree \| snapshot
2005-05-26	jprocter	partially updated help. Added separate treeviewing...	commit \| commitdiff \| tree \| snapshot
2005-05-26	amwaterhouse	check for null residues	commit \| commitdiff \| tree \| snapshot
2005-05-26	amwaterhouse	DOnt add Conservation graph to every residue	commit \| commitdiff \| tree \| snapshot
2005-05-26	amwaterhouse	toString modified	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	reset colours added	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	more clustalx bugs fixed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	getHexString added	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	all can threshold	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	output to textbox	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	layout changes	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	capitals	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	format changes	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	remove scrollpane	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	Capitalise	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	c&p changed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	use getHexString in util	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	usercolours changed	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	output text to textbox	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	all colours can threshold	commit \| commitdiff \| tree \| snapshot
2005-05-25	amwaterhouse	selectiongroup could be null	commit \| commitdiff \| tree \| snapshot
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