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jalview.git
2019-04-18 hansonrminor code clean up commit | commitdiff | tree | snapshot
2019-04-18 hansonrminor code clean up commit | commitdiff | tree | snapshot
2019-04-18 hansonr// BH 2018.04.18 comment: addNotify() is not appropriat... commit | commitdiff | tree | snapshot
2019-04-18 hansonrAdds check for gap padding to disallow fast paint upon... commit | commitdiff | tree | snapshot
2019-04-18 hansonrremoves unnecessary clearFastPaint commit | commitdiff | tree | snapshot
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() commit | commitdiff | tree | snapshot
2019-04-18 hansonrpushing again, just comments commit | commitdiff | tree | snapshot
2019-04-18 hansonrhack for fastpaint Java bug upshifting one line after... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-1793 basic help text for VCF option commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 additional release notes commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 release notes first pass complete commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not... commit | commitdiff | tree | snapshot
2019-04-18 hansonrreverting seqPanel.seqCanvas.clearFastPaint(); commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-2620 updated help page to mention alternative genet... commit | commitdiff | tree | snapshot
2019-04-18 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL" commit | commitdiff | tree | snapshot
2019-04-18 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-18 hansonrexplicit Hashtable objects commit | commitdiff | tree | snapshot
2019-04-18 hansonradds an explicit clearing of the SeqCanvas fastPaint... commit | commitdiff | tree | snapshot
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java) commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 fix 2.11 html anchor in docs commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 Jalview 2.11 what’s New and estimated release... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 tweak PCA documentation commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele... commit | commitdiff | tree | snapshot
2019-04-17 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Add commons-compress-1.18.jar commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Bundling appropriate Mac OS/Windows JRE as... commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 New version of getdown which will cope with... commit | commitdiff | tree | snapshot
2019-04-16 Ben SoaresJAL-3130 moved resources/install4j to utils/install4j commit | commitdiff | tree | snapshot
2019-04-16 hansonrbetter resource loading/file caching commit | commitdiff | tree | snapshot
2019-04-16 hansonrcaching of DnD files dropped commit | commitdiff | tree | snapshot
2019-04-16 hansonrjmol-app updated for SwingJS ZipTools upgrade commit | commitdiff | tree | snapshot
2019-04-16 hansonrlocalizes Thread colourby so that it does not cause... commit | commitdiff | tree | snapshot
2019-04-16 hansonrcomments only commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 tidy up system.output jims/JAL-3130_Java11_Gradle_publishing commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 call Jalview via the Test JVM’s JAVA_HOME... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 refactored ‘clover’ to ‘use_clover’ since... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 reportCurrentWorkingDirectory test... commit | commitdiff | tree | snapshot
2019-04-16 hansonrmissing check for JavaScript in client response for... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 hansonrunused old SwingJS dependencies commit | commitdiff | tree | snapshot
2019-04-16 hansonrunused old SwingJS dependencies commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 hansonrAdds _j2sclasslist.txt to SwingJS distribution; fixes... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3196 change default are resource properties to... commit | commitdiff | tree | snapshot
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Somewhere in the old libs the Jws2 client... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle... commit | commitdiff | tree | snapshot
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt... commit | commitdiff | tree | snapshot
2019-04-15 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 write clover.xml during cloverReport phase commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 make sure testng-results.xml is generated commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 instrument main and compile separately to... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 gradle test now runs open clover 4.3.1 and... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 ensure J11 libs/modules are added when buildin... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 clean up eclipse class path for dependencies... commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3018 REST version updated to 10.0 commit | commitdiff | tree | snapshot
2019-04-10 Jim ProcterJAL-3033 and more classes for examples core commit | commitdiff | tree | snapshot
2019-04-09 Jim ProcterJAL-3033 jalview.org/jalview-js/JalviewJS.shtml?open... commit | commitdiff | tree | snapshot
2019-04-09 hansonrJTable improvements commit | commitdiff | tree | snapshot
2019-04-09 hansonrbetter comment regarding setting recognized ajax-enable... commit | commitdiff | tree | snapshot
2019-04-09 hansonrMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2019-04-09 hansonrcode formatting only commit | commitdiff | tree | snapshot
2019-04-08 Jim ProcterJAL-3033 more classes for the kitchen sink commit | commitdiff | tree | snapshot
2019-04-08 Jim ProcterJAL-3033 updated classlist for loading the example... commit | commitdiff | tree | snapshot
2019-04-05 hansonrFile caching activated explicitly in Platform commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 adapted getdown src commit | commitdiff | tree | snapshot
2019-04-05 hansonrFix for #196 EBI does not allow AJAX on Tools/dbfetch... commit | commitdiff | tree | snapshot
2019-04-05 hansonrcommand line fix commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG... commit | commitdiff | tree | snapshot
2019-04-05 hansonrMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2019-04-05 hansonrfixes for Jalview command-line URI code commit | commitdiff | tree | snapshot
2019-04-05 gmungocJAL-3204 update to uniprot schema commit | commitdiff | tree | snapshot
2019-04-04 hansonrMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2019-04-04 hansonrj2sNative cleanup; fix for JTextArea preferred height... commit | commitdiff | tree | snapshot
2019-04-04 gmungocJAL-3220 j2sIgnore on 3 more main methods commit | commitdiff | tree | snapshot
2019-04-04 gmungocJAL-3220 j2sIgnore on main methods on test / utility... commit | commitdiff | tree | snapshot
2019-04-04 gmungocJAL-3220 unneeded main methods removed commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -... commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 JAL-3007 more files needed for getdown launcher commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 JAL-3007 improvements to gradle build commit | commitdiff | tree | snapshot
2019-04-04 gmungocMerge branch 'develop' into Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... commit | commitdiff | tree | snapshot
2019-04-03 hansonrremoving early SplitPane SwingJS hack commit | commitdiff | tree | snapshot
2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top commit | commitdiff | tree | snapshot
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... commit | commitdiff | tree | snapshot
2019-04-02 hansonr#210 Fixes Ensembl fetch problem (really) commit | commitdiff | tree | snapshot
2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel... bug/JAL-3218scalePanelPopups commit | commitdiff | tree | snapshot
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11. Now... commit | commitdiff | tree | snapshot
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