jalview.git
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress...
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle...
2017-10-23 gmungocJAL-2737 JAL-1854 corrected package suppressions, updat...
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into...
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection...
2017-10-20 Jim ProcterJAL-547 PID script in release notes
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into...
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score...
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe...
2017-10-18 Jim ProcterJAL-2777 JAL-2773 release notes
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional...
2017-10-17 Jim ProcterJAL-2777 release notes
2017-10-17 Jim ProcterMerge branch 'features/JAL-2773_dontalwaysrecolourstruc...
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of...
2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour...
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of...
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns...
2017-10-11 Jim ProcterJAL-2757 release notes
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into...
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery
2017-10-11 kiramtJAL-2742 test updates following review
2017-10-11 kiramtJAL-2742 minor test updates following review
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
2017-10-10 Jim ProcterJAL-2523 release notes
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-09 Jim ProcterMerge branch 'patch/JAL-2446_mergeconflictmissed' into...
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method.
2017-10-06 Jim ProcterMerge branch 'patch/JAL-2116_java9_antjnlpfix' into...
2017-10-06 Jim ProcterJAL-2116 fix jnlp file post-processing so java 9 module...
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response
2017-10-04 gmungocJAL-2523 start of refactoring...
2017-10-03 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' into...
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology
2017-10-01 Jim ProcterMerge branch 'documentation/JAL-2751patch2102b2' into...
2017-10-01 Jim ProcterJAL-2751 what's new for 2.10.2b2 patch
2017-10-01 Jim ProcterJAL-2751 patch release notes
2017-09-30 Jim ProcterJAL-2751 bump version and new releases entry
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP...
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP...
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame
2017-09-26 kiramtJAL-2742 uncomment test
2017-09-26 kiramtJAL-2742 fixed
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-20 kiramtJAL-2662 Adjustments to hidden columns benchmark
2017-09-19 kiramtJAL-2662 Updated README
2017-09-19 kiramtJAL-2737 Checkstyle error fixes
2017-09-19 kiramtJAL-2622 Tidied up gitignore, added to README
2017-09-19 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-09-19 kiramtMerge remote-tracking branch 'origin/task/JAL-2662...
2017-09-18 gmungocMerge remote-tracking branch 'origin/patch/JAL-2732...
2017-09-18 gmungocJAL-2728 fine tuned initial split of split frame view
2017-09-15 Jim ProcterMerge branch 'documentation/JAL-2698_release2103' into...
2017-09-15 Jim ProcterJAL-2698 new releases.html entry, whatsNew.html and...
2017-09-15 Jim ProcterMerge branch 'bug/JAL-2728splitFrameDivision' into...
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732
2017-09-15 Jim ProcterJAL-1625 javadoc
2017-09-15 Jim ProcterJAL-2733 redraw after changing the memory status displa...
2017-09-15 Jim ProcterJAL-1625 JAL-1900 preserve the original DesktopManager...
2017-09-15 Jim ProcterJAL-1900 JAL-1625 back out OSX specific double buffer...
2017-09-15 Jim ProcterJAL-1551 standard code formatting
2017-09-15 Jim ProcterJAL-2732 force a redraw after resize/drag to clear...
2017-09-15 gmungocJAL-2728 use right denominator for min/max ratio calcul... bug/JAL-2728splitFrameDivision
2017-09-15 gmungocJAL-2728 limit divider to ensure seqs visible (wip!)
2017-09-15 gmungocJAL-741 add tooltip to feature group checkbox
2017-09-12 gmungocMerge branch 'bug/JAL-2721fastPaintNPE' into develop
2017-09-07 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' of...
2017-09-07 Jim ProcterMerge branch 'bug/JAL-2511idAlignment' into develop
2017-09-07 Jim ProcterJAL-2511 release notes for 2.10.2b1
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