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jalview.git
2024-04-02
Ben Soares
JAL-4059 minor CSS fix
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2024-03-20
Ben Soares
Merge branch 'bug/JAL-4375_annotation_not_redrawn_corre...
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2024-03-15
Ben Soares
JAL-4059 Updated SwingJS and JSmol (March 2024). Fix...
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2024-03-15
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
bug/JAL-4238_PAEs_not_being_shown_in_JalviewJS
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2024-03-15
Ben Soares
JAL-4320 Improve the inputs and outputs dependencies...
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2024-03-15
Ben Soares
JAL-3225 Force gradle version in eclipse settings
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2024-02-26
Ben Soares
JAL-4381 Plausibly better division of line segment...
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2024-02-23
Ben Soares
JAL-4381 For lineGraph line segments that should be...
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2024-02-21
Ben Soares
JAL-4375 JAL-4381 Removal of AnnotationColouring and...
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2024-02-20
Ben Soares
JAL-4380 Added information to annotation tooltips when...
improvement/JAL-4381_dynamic_value_colouring_of_annotations
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2024-02-20
Ben Soares
JAL-4375 Add an AnnotationColouringI interface, and...
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2024-02-07
Ben Soares
JAL-4375 Pass through a flag to AnnotationRenderer...
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2024-02-07
Ben Soares
JAL-4375 This extra clip isn't necessary
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2024-02-07
Ben Soares
JAL-4375 Clipped label text in annotations to annotatio...
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2024-02-02
Ben Soares
JAL-4375 I don't think turning off antialiasing is...
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2024-02-02
Ben Soares
JAL-4375 Single width pixel artifacts appearing for...
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2024-02-01
Ben Soares
JAL-4375 fix typo in property name
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2024-02-01
Ben Soares
JAL-4375 Improved trackpad user experience for wrapped...
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2024-01-31
Ben Soares
JAL-4375 More consistent calculation for dashed thresho...
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2024-01-31
Ben Soares
JAL-4375 Different way of getting mouse wheel movement...
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2024-01-31
Ben Soares
JAL-4375 Fix big sideways scroll from trackpad at begin...
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2024-01-31
Ben Soares
JAL-4375 Fixed sensitivity of new more responsive left...
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2024-01-31
Ben Soares
JAL-4375 Fixed the following when trackpad side-scrolli...
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2024-01-23
James Procter
JAL-4356 release notes
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2024-01-23
James Procter
JAL-4356 update release notes for 2.11.3.3
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2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2024-01-23
James Procter
Merge branch 'develop' into bug/JAL-4290_headless_align...
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2024-01-23
Ben Soares
JAL-4367 Limit right and top adjustments
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2024-01-23
Ben Soares
JAL-4290 Fix image comparison between gui and headless...
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2024-01-23
Ben Soares
JAL-4290 fixed tests
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2024-01-23
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2024-01-23
James Procter
JAL-4353 wait for files to be written fully before...
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2024-01-23
James Procter
JAL-4353 singleThread all tests
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2024-01-23
Ben Soares
Merge branch 'bug/JAL-4235_gradle_task_jalviewjsTranspi...
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2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4235_gradle_task_ja...
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2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4235_gradle_task_ja...
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2024-01-23
James Procter
JAL-4369 invokeAndWait to avoid hang whilst calling...
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2024-01-23
James Procter
JAL-4369 uniprotkb - try to avoid another redirect...
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2024-01-23
James Procter
JAL-4369 use rest.uniprot.org as fetch domain
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2024-01-23
James Procter
Merge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4368_default_colourscheme_applied...
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2024-01-19
Ben Soares
JAL-4373 Setting the jvmmempc and jvmmemmax strings...
bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch
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2024-01-19
Ben Soares
JAL-4373 Fix Main-Class and other attribute settings...
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2024-01-05
Ben Soares
JAL-4368 Only set a colour scheme if --colour is given...
bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately
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2024-01-05
Ben Soares
JAL-4328 Example html 'form' launch in examples.html
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2023-12-20
Ben Soares
JAL-4238 Marked where JalviewJS is hanging on 3DBeacons...
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2023-12-20
Ben Soares
JAL-4059 Added some more Platform.addJ2SDirectDatabaseC...
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2023-12-20
Ben Soares
JAL-4328 Move the examples links to a sensible place...
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2023-12-19
Ben Soares
JAL-4290 Fixed one test
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2023-12-18
Ben Soares
JAL-4290 not quite working tests
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2023-12-18
Ben Soares
JAL-4290 incorrect usage of main()
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2023-12-15
Ben Soares
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2023-12-15
Ben Soares
JAL-4290 Add method to allow for specific settings...
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2023-12-15
Ben Soares
JAL-4290 Set structureSelectionManager settings more...
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2023-12-15
Ben Soares
JAL-4059 Only run this once
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2023-12-15
Ben Soares
JAL-4059 Use namespaced query parameters in preference...
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2023-12-15
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_figure_wi...
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2023-12-15
James Procter
JAL-4290 new CommandsTest.headlessOrGuiImageOutputTest...
bug/JAL-4290_headless_alignment_figure_with_sse
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2023-12-15
Ben Soares
JAL-4290 Move some annotation visibility settings to...
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2023-12-14
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
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2023-12-14
James Procter
JAL-4356 update release notes
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
JAL-4353 wait for files to be written fully before...
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2023-12-14
James Procter
JAL-4217 singleThread all tests
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2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
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2023-12-14
Ben Soares
Merge branch 'develop' into bug/JAL-4238_PAEs_not_being...
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2023-12-14
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-2934proportionalScr...
bug/JAL-2934proportionalScrolling
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2023-12-14
Ben Soares
JAL-4059 Improvement to launch indicator
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2023-12-14
Ben Soares
JAL-4059 Updated swingjs and removed spare library...
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2023-12-12
Ben Soares
JAL-4353 bigger tighter test
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2023-12-12
James Procter
JAL-4217 don’t try and export an image when Jmol is...
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2023-12-12
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-12
James Procter
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
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2023-12-12
James Procter
JAL-4217 close internal frame on the swing thread to...
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2023-12-12
Ben Soares
JAL-4353 helper method and test for primary/secondary...
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2023-12-12
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-12
James Procter
JAL-4353 failing test
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2023-12-12
James Procter
JAL-4353 fix assert that successive test output files...
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2023-12-11
James Procter
JAL-4192 more specific info about versions needed
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2023-12-06
Ben Soares
JAL-4353 re-used random color code
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2023-12-06
Ben Soares
JAL-4353 Preserve the user given 'linkedId' with ArgVal...
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2023-12-06
James Procter
JAL-4356 bump RELEASE
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2023-12-06
James Procter
JAL-4356 new release notes and whats new for 2.11.3...
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2023-12-06
James Procter
Merge branch 'patch/JAL-840_clustalx_docs_fix' into...
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2023-12-06
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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2023-12-06
Ben Soares
JAL-4353 Add a 'random' colour to produce a random...
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2023-12-05
Ben Soares
JAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
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2023-12-04
Ben Soares
JAL-4059 Attempts to set JalviewJS desktop geometry...
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2023-12-04
Ben Soares
JAL-4059 rename files from jsmol j2s zip from jsmol...
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2023-12-01
Ben Soares
JAL-4243 Updated bio.tools record and JSON (version...
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2023-11-30
James Procter
JAL-4351 update release notes for JAL-4342
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2023-11-30
James Procter
Merge branch 'patch/JAL-4342_emptyannotationsexport...
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2023-11-30
James Procter
JAL-4342 test and patch checking annotation csv export...
patch/JAL-4342_emptyannotationsexport
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2023-11-30
James Procter
Patch fixes JAL-4165 - added to release notes JAL-4351
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2023-11-30
James Procter
JAL-4351 2.11.3.2 scheduled for 1st December release
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