jalview.git
2005-11-24 amwaterhouseNew WSWUBlast Client files
2005-11-18 amwaterhouseAdd PDB accession to new sequence
2005-11-18 amwaterhouseAllow single line BLC files
2005-11-18 amwaterhouseUse PDB column format
2005-11-18 amwaterhouseAllow for 1 line BLC files
2005-11-18 amwaterhouseParse name from last index of /
2005-11-18 amwaterhouseUse full name in dataset creation
2005-11-18 amwaterhouseShow error message outside thread loop
2005-11-17 amwaterhouseHidden tabs and vamsas refs for beta release
2005-11-17 amwaterhouseInitial col is light gray
2005-11-17 amwaterhouseGraphics must be set from nullFrame
2005-11-17 amwaterhouseNo more isOverview
2005-11-17 amwaterhouseIf overview is visible, update it
2005-11-17 amwaterhouseno more show translation
2005-11-17 amwaterhouseHide Tab settings for build
2005-11-17 amwaterhouseUse setRGB rather than color, fillrect
2005-11-17 amwaterhouseMove start and end before parsing name
2005-11-17 amwaterhouseHide vamsas settings for build
2005-11-17 amwaterhouseNow outputs features and groups, and wrapped alignment...
2005-11-17 amwaterhouseOptimized Overview
2005-11-17 amwaterhouseUse stringbuffer, not string+
2005-11-17 amwaterhouseRemove system.out
2005-11-16 amwaterhouseHighlight doesnt use offset
2005-11-16 amwaterhouseDon't initialise a char in findIndex
2005-11-16 amwaterhouseDon't set chain colours in hashtable
2005-11-16 amwaterhouseHighlight from alignment
2005-11-16 amwaterhouseNo more myAtom, Highlight from alignment
2005-11-16 amwaterhouseno need for myAtom
2005-11-16 amwaterhouseParsing updates
2005-11-16 amwaterhouseNot used
2005-11-15 amwaterhouseKeep all public methods
2005-11-15 amwaterhouseNo radio buttons in applet
2005-11-15 amwaterhouseDont use this yet
2005-11-15 amwaterhouseDont use myGraphics
2005-11-15 amwaterhouseRemoved
2005-11-15 amwaterhouseGraphical bits moved into files to save jar size
2005-11-15 amwaterhouseRemoved to reduce jar size
2005-11-14 amwaterhouseModifications for Applet PDB viewer
2005-11-14 amwaterhouseAdd getAlignment function
2005-11-14 amwaterhouseModifications for Applet PDB
2005-11-14 amwaterhouseFix bug where all chains are called A
2005-11-14 amwaterhouseApplet PDB viewer
2005-11-14 amwaterhouseCatch exceptions
2005-11-14 amwaterhouseUse shortname
2005-11-14 amwaterhousegetShortName
2005-11-14 amwaterhousefindByShortName
2005-11-14 amwaterhouseDont add sequence group at the moment
2005-11-11 amwaterhouseNo new PDBViewer
2005-11-11 amwaterhouseLast chance, is the sequence without id?
2005-11-11 amwaterhouseSequenceFetcher new class
2005-11-11 amwaterhouseAddPdbEntry added
2005-11-11 amwaterhousePNG and EPS in ImageMaker
2005-11-10 amwaterhouseAllow featuresettings to be enabled on load
2005-11-10 amwaterhouseAdd mousewheel listener
2005-11-10 amwaterhouseREmove system.out
2005-11-10 amwaterhouseAlignSeq takes printstream as arg
2005-11-10 amwaterhouseAdd mapping details to stringbuffer
2005-11-10 amwaterhouseOnlyAddPDBEntries
2005-11-10 amwaterhouseSet PDBViewer
2005-11-10 amwaterhouseUse Antialiasing
2005-11-10 amwaterhousePDB implementation updated
2005-11-10 amwaterhouseIf selectionGroup is null, return
2005-11-10 amwaterhouseReturn accurate RGB for transparent residues
2005-11-10 amwaterhouseMake cancelled public variable
2005-11-10 amwaterhousegetDbRef
2005-11-10 amwaterhouseGet and set PDBEntrys
2005-11-10 amwaterhousePDB is now PDBEntry
2005-11-10 amwaterhouseUse StringBUffer instead of String
2005-11-10 amwaterhouseColour PDB by sequence
2005-11-10 amwaterhousePDM mapping
2005-11-10 amwaterhouseRot Canvas replaced with PDBViewer
2005-11-10 amwaterhouseMapping to PDB added
2005-11-08 amwaterhousejalview mapping
2005-11-08 amwaterhousePreliminary storeJalview
2005-11-08 amwaterhousegetVersion added for Castor mapping
2005-11-04 amwaterhouseId parsing moved to Sequence
2005-11-04 amwaterhouseREmove system.out
2005-11-04 amwaterhouseShow full id
2005-11-04 amwaterhouseDisplay full id in trees
2005-11-04 amwaterhouseUse visible id for sorting
2005-11-02 amwaterhouseLoad and save Feature Colour Settings
2005-11-02 amwaterhouseJava 1.5 bug note
2005-11-02 amwaterhouseAllow residue prefix to dataset
2005-11-02 amwaterhouseOnly add first Id to suggestedIds
2005-11-02 amwaterhouseAdd jvsuffix and dbref to menu
2005-11-02 amwaterhouse2CdbPrefix true by default
2005-11-02 amwaterhouseOutput jvsuffix, dbref
2005-11-01 amwaterhouseInform user about visual alignment, not dataset updates
2005-11-01 amwaterhouseWrap long description in table
2005-11-01 jprocterdataset reference propagated to new MsaWS alignment.
2005-11-01 jprocterstores reference to dataset sequence if present
2005-11-01 amwaterhouseLabel changes
2005-11-01 amwaterhouseShow JVSuffix
2005-11-01 amwaterhousedisulfide bond exceptions
2005-11-01 jproctertrivial change ("" to new String() in static method)
2005-11-01 amwaterhouseNew schema, new objects
2005-11-01 amwaterhouseAdjust seq limits for visual and dataset sequences
2005-10-31 amwaterhousedbPrefix and jvsuffix added
2005-10-31 amwaterhousegetDisplayId changed
2005-10-31 amwaterhousejalviewClipboard added
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