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jalview.git
2023-11-07 Ben SoaresJAL-4059 --timeout not needed with --virtual-time-budget commit | commitdiff | tree | snapshot
2023-11-03 Ben SoaresJAL-4239 Using own id generation to avoid Random.nextLo... commit | commitdiff | tree | snapshot
2023-11-02 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... commit | commitdiff | tree | snapshot
2023-11-02 Ben SoaresJAL-4059 updated _j2sclasslist.txt commit | commitdiff | tree | snapshot
2023-11-02 Ben SoaresJAL-4059 updated test for StringUtils commit | commitdiff | tree | snapshot
2023-11-02 Ben SoaresJAL-4059 New namespaced query string parameters. commit | commitdiff | tree | snapshot
2023-11-02 Ben SoaresJAL-4059 swingjs and Jmol-SwingJS.zip from Jmol github. commit | commitdiff | tree | snapshot
2023-11-02 Ben SoaresJAL-4059 Update closure-compiler. commit | commitdiff | tree | snapshot
2023-11-01 James ProcterJAL-4090 JAL-4281 JAL-4311 release notes commit | commitdiff | tree | snapshot
2023-11-01 James ProcterMerge branch 'patch/JAL-4281_idwidthandannotHeight_in_p... commit | commitdiff | tree | snapshot
2023-11-01 James ProcterJAL-4281 patch test so it passes on build server and... patch/JAL-4281_idwidthandannotHeight_in_project commit | commitdiff | tree | snapshot
2023-11-01 James ProcterJAL-4090 release notes for JAL-4315 commit | commitdiff | tree | snapshot
2023-11-01 James ProcterMerge branch 'feature/JAL-4315_fc_draganddrop' into... commit | commitdiff | tree | snapshot
2023-11-01 James ProcterJAL-4090 JAL-4317 release notes commit | commitdiff | tree | snapshot
2023-11-01 James ProcterMerge branch 'patch/JAL-4317_enablefeaturewhenadjusting... commit | commitdiff | tree | snapshot
2023-11-01 James ProcterMerge branch 'develop' into patch/JAL-4281_idwidthandan... commit | commitdiff | tree | snapshot
2023-11-01 James ProcterMerge branch 'patch/JAL-4260_fix_up_select_via_ruler_in... commit | commitdiff | tree | snapshot
2023-11-01 James ProcterJAL-4260 encapsulate logic for resolving nearest column... patch/JAL-4260_fix_up_select_via_ruler_in_wrapped commit | commitdiff | tree | snapshot
2023-11-01 James ProcterJAL-4260 reinstate annotation auto-id-width for wrapped... commit | commitdiff | tree | snapshot
2023-11-01 Ben SoaresJAL-4059 Add the newest exampleFile_2_7.jar to the... commit | commitdiff | tree | snapshot
2023-10-31 James ProcterJAL-4260 fix up click/drags on ruler area in wrapped... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 simpler reimplementation of StringUtils.separa... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 Actually fix the order of js lib syncs to... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 upgraded Jmol commit | commitdiff | tree | snapshot
2023-10-31 James ProcterJAL-4260 right align the annotation labels regardless... commit | commitdiff | tree | snapshot
2023-10-31 James ProcterJAL-244 noticed NPE exception was possible when visibil... commit | commitdiff | tree | snapshot
2023-10-31 James ProcterJAL-244 knock on - make sure alignPanel is laid out... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4319 Downgrade shadow(Jar) module to stop triggerin... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 Just keeping these jsmol versions handy. ... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 If we upgrade Jsmol, do we want to upgrade... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 Converting Pattern/Matcher methods that are... commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 rename jsmol zip file for clarity commit | commitdiff | tree | snapshot
2023-10-31 Ben SoaresJAL-4059 ensure order of transferring JS lib zip files... commit | commitdiff | tree | snapshot
2023-10-30 James ProcterJAL-4317 enable display of feature when showing its... patch/JAL-4317_enablefeaturewhenadjustingstyle commit | commitdiff | tree | snapshot
2023-10-30 James ProcterHandle feature settings files loaded via drag and drop... feature/JAL-4315_fc_draganddrop commit | commitdiff | tree | snapshot
2023-10-30 James ProcterJAL-4315 allow feature settings to be loaded from a... commit | commitdiff | tree | snapshot
2023-10-30 James ProcterJAL-4315 identify feature settings file from its xml... commit | commitdiff | tree | snapshot
2023-10-26 Ben SoaresJAL-4059 Now using "Google Chrome for Testing" https... commit | commitdiff | tree | snapshot
2023-10-26 James ProcterMerge branch 'patch/JAL-4311_import_pLDDT_scores_from_n... commit | commitdiff | tree | snapshot
2023-10-26 James ProcterMerge branch 'bug/JAL-4313_cme_in_tests' into patch... commit | commitdiff | tree | snapshot
2023-10-25 Ben SoaresMerge branch 'develop' into bug/JAL-4289_group_boundary... bug/JAL-4289_group_boundary_not_drawn_properly_in_fastpaint_or_paint commit | commitdiff | tree | snapshot
2023-10-25 James ProcterJAL-4312 defend against ConcurrentModificationException bug/JAL-4313_cme_in_tests commit | commitdiff | tree | snapshot
2023-10-25 James ProcterJAL-4312 call AlignFrame.setAnnotationsVisibility on... commit | commitdiff | tree | snapshot
2023-10-24 Ben SoaresJAL-4059 Updated jmoljs and _j2sclasslist.txt commit | commitdiff | tree | snapshot
2023-10-23 James ProcterJAL-4311 fix ranking so models with like scores are... improvement/JAL-4124_dont_duplacate_PAE_data_acrossviews commit | commitdiff | tree | snapshot
2023-10-23 James ProcterJAL-4311 failing test case for 3d-beacons epas1_human... commit | commitdiff | tree | snapshot
2023-10-23 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... commit | commitdiff | tree | snapshot
2023-10-23 James ProcterJAL-4310 let the user know when model pages are not... commit | commitdiff | tree | snapshot
2023-10-23 James ProcterMerge branch 'develop' into improvement/JAL-4124_dont_d... commit | commitdiff | tree | snapshot
2023-10-23 James ProcterJAL-4090 release weds 25th Oct 23 - JAL-4308 release... commit | commitdiff | tree | snapshot
2023-10-23 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... commit | commitdiff | tree | snapshot
2023-10-23 James ProcterMerge branch 'improvement/JAL-4308_smalleridtooltip... commit | commitdiff | tree | snapshot
2023-10-23 James ProcterJAL-4090 defensive check for featureSettings redraws... improvement/JAL-4308_smalleridtooltip commit | commitdiff | tree | snapshot
2023-10-23 James ProcterJAL-4308 reduce number of refs to 5, always have canoni... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterJAL-4153 avoid use of invokeAndWait, increase wait... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterJAL-1551 errant tab and import commit | commitdiff | tree | snapshot
2023-10-22 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterMerge branch 'jims/bug/JAL-4298_java_console_causing_ha... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterMerge branch 'develop' into improvement/JAL-3783_upgrad... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterMerge branch 'jims/bug/JAL-4298_java_console_causing_ha... commit | commitdiff | tree | snapshot
2023-10-22 James ProcterJAL-4090 update docs for changed gradle -P options... commit | commitdiff | tree | snapshot
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup commit | commitdiff | tree | snapshot
2023-10-21 James ProcterMerge branch 'patch/JAL-4110_stdout_for_tests' into... commit | commitdiff | tree | snapshot
2023-10-21 James ProcterJAL-4110 allow configuration of stdout/err test output... patch/JAL-4110_stdout_for_tests commit | commitdiff | tree | snapshot
2023-10-21 James ProcterMerge branch 'develop' into patch/JAL-4110_stdout_for_tests commit | commitdiff | tree | snapshot
2023-10-20 Ben SoaresJAL-4298 Update help docs to reflect Groovy changes improvement/JAL-3783_upgrade_to_groovy-4 commit | commitdiff | tree | snapshot
2023-10-20 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy... commit | commitdiff | tree | snapshot
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri... commit | commitdiff | tree | snapshot
2023-10-20 James ProcterJAL-4298 reuse existing log level preference method commit | commitdiff | tree | snapshot
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide commit | commitdiff | tree | snapshot
2023-10-20 Ben SoaresJAL-4298 another implicated line bug/JAL-4298_java_console_causing_hang_at_startup commit | commitdiff | tree | snapshot
2023-10-20 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... commit | commitdiff | tree | snapshot
2023-10-20 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc... commit | commitdiff | tree | snapshot
2023-10-20 James ProcterJAL-4307 some models return null for hetatm list commit | commitdiff | tree | snapshot
2023-10-20 James ProcterJAL-4298 try much harder to avoid modifying console... patch/JAL-4298_synchronize_consoledoc commit | commitdiff | tree | snapshot
2023-10-19 Ben SoaresMerge branch 'patch/JAL-4298_synchronize_consoledoc... commit | commitdiff | tree | snapshot
2023-10-19 Ben SoaresJAL-629 Fix --nodebug turning off debug mode from prope... commit | commitdiff | tree | snapshot
2023-10-19 Ben SoaresJAL-4298 comment markers commit | commitdiff | tree | snapshot
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy... commit | commitdiff | tree | snapshot
2023-10-19 James ProcterJAL-4298 avoid deadlock waiting to update doc when... commit | commitdiff | tree | snapshot
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... commit | commitdiff | tree | snapshot
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... commit | commitdiff | tree | snapshot
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy... commit | commitdiff | tree | snapshot
2023-10-18 Ben SoaresJAL-629 Run non-alignframe linked groovy scripts. ... commit | commitdiff | tree | snapshot
2023-10-18 Ben SoaresJAL-4262 Fix the nonblockingdialog so that Jalview... commit | commitdiff | tree | snapshot
2023-10-18 James ProcterMerge branch 'doc/JAL-4090_Release_2_11_3_0' into develop commit | commitdiff | tree | snapshot
2023-10-18 James ProcterJAL-4090 JAL-4303 as known defect commit | commitdiff | tree | snapshot
2023-10-17 James ProcterMerge branch 'bug/JAL-4302_treeheightrendererbroke... commit | commitdiff | tree | snapshot
2023-10-17 James ProcterMerge branch 'doc/JAL-4090_Release_2_11_3_0' into develop commit | commitdiff | tree | snapshot
2023-10-17 James ProcterJAL-4090 JAL-4302 marked as known defect bug/JAL-4302_treeheightrendererbroke commit | commitdiff | tree | snapshot
2023-10-17 James ProcterJAL-4134 TODO printNode update for columnTrees commit | commitdiff | tree | snapshot
2023-10-17 James ProcterJAL-4134 JAL-4302 remove unnecessary casts commit | commitdiff | tree | snapshot
2023-10-17 James ProcterJAL-4090 JAL-4089 document use of selected columns... doc/JAL-4090_Release_2_11_3_0 commit | commitdiff | tree | snapshot
2023-10-17 James ProcterMerge branch 'bug/JAL-4089_selectedcolshiddenregions... commit | commitdiff | tree | snapshot
2023-10-17 James ProcterJAL-4089 selected columns are reported in absolute... commit | commitdiff | tree | snapshot
2023-10-16 James ProcterMerge branch 'bug/JAL-4295_hangjmolandmouseovers' into... commit | commitdiff | tree | snapshot
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser... commit | commitdiff | tree | snapshot
2023-10-13 James ProcterJAL-4295 concatenate all mouseover highlights into... commit | commitdiff | tree | snapshot
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