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jalview.git
2023-05-08 Mateusz WarownyJAL-3954 Create ParamDatastore builder for phmmer commit | commitdiff | tree | snapshot
2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with... commit | commitdiff | tree | snapshot
2023-04-24 James ProcterJAL-4155 Viewport holds a reference to its AlignmentVie... commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyJAL-4154 Remove not-bamboo flag from testGetVisibleWidth commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyJAL-4154 Update AlignmentPanelTest to use new forArch... commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method. commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into... commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into... commit | commitdiff | tree | snapshot
2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages. JAL-4152-typed-singleton-provider commit | commitdiff | tree | snapshot
2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic... commit | commitdiff | tree | snapshot
2023-03-17 Mateusz WarownyJAL-4146 Fix SeqCanvasTest setup commit | commitdiff | tree | snapshot
2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br> commit | commitdiff | tree | snapshot
2023-03-14 Mateusz WarownyJAL-4146 Patch parseColourString test to expect null... commit | commitdiff | tree | snapshot
2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty commit | commitdiff | tree | snapshot
2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with... commit | commitdiff | tree | snapshot
2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop commit | commitdiff | tree | snapshot
2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator... commit | commitdiff | tree | snapshot
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse commit | commitdiff | tree | snapshot
2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables... commit | commitdiff | tree | snapshot
2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console commit | commitdiff | tree | snapshot
2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4102 update date and release notes for 2.11.2.6 commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 missing mock server response commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 formatting commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 updated mock tests and responses for v2.0 api commit | commitdiff | tree | snapshot
2023-01-06 Jim ProcterMerge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha... commit | commitdiff | tree | snapshot
2023-01-06 Ben SoaresJAL-4111 Added commit and date text to splashscreens... commit | commitdiff | tree | snapshot
2023-01-05 Ben SoaresJAL-4111 improvement to convert -draw argument commit | commitdiff | tree | snapshot
2023-01-05 Ben SoaresJAL-4111 Use ImageMagick to add commit and build time... commit | commitdiff | tree | snapshot
2023-01-05 Ben SoaresJAL-4111 Fixed channel.props to allow replacement of... commit | commitdiff | tree | snapshot
2023-01-05 Benedict Soares... JAL-4111 fixed DMG background image for generic Develop... commit | commitdiff | tree | snapshot
2022-12-22 Ben SoaresJAL-4111 Allow -PCHANNEL=DEVELOP-version for new appbas... commit | commitdiff | tree | snapshot
2022-12-21 Jim ProcterJAL-3362 update release to 2.12 alpha/JAL-3362_Jalview_212_alpha commit | commitdiff | tree | snapshot
2022-12-16 Jim ProcterJAL-4110 added line to build.gradle that allows stdout... update/JAL-4108_212_testng_jar_update commit | commitdiff | tree | snapshot
2022-12-16 Jim ProcterJAL-4109 examine -Djalview.loglevel on startup to decid... commit | commitdiff | tree | snapshot
2022-12-16 Jim ProcterJAL-4107 JAL-4108 updated testNG and other test depende... commit | commitdiff | tree | snapshot
2022-12-16 Jim ProcterJAL-4107 patching tests after merge spike/jims_dec_2022_212_merge commit | commitdiff | tree | snapshot
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE commit | commitdiff | tree | snapshot
2022-12-16 Jim ProcterJAL-4107 remove old jMol jar commit | commitdiff | tree | snapshot
2022-12-14 Jim ProcterJAL-4107 fix test compilation issues commit | commitdiff | tree | snapshot
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... commit | commitdiff | tree | snapshot
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl... commit | commitdiff | tree | snapshot
2022-12-12 Mateusz WarownyWIP mmw/JAL-3878_ws-overhaul-3 commit | commitdiff | tree | snapshot
2022-11-30 Jim ProcterJAL-4102 bump version number commit | commitdiff | tree | snapshot
2022-11-30 Jim ProcterJAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL... commit | commitdiff | tree | snapshot
2022-11-30 Ben SoaresJAL-4101 Updated Rfam* tests commit | commitdiff | tree | snapshot
2022-11-30 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL commit | commitdiff | tree | snapshot
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... commit | commitdiff | tree | snapshot
2022-11-29 Ben SoaresJAL-4101 Updated Rfam* tests commit | commitdiff | tree | snapshot
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL commit | commitdiff | tree | snapshot
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... commit | commitdiff | tree | snapshot
2022-10-26 Ben SoaresJAL-3416 (and others) increasing number of STDERR lines... commit | commitdiff | tree | snapshot
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch Release_2_11_2_5 commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 final fix for 2.11.2.5 - 5pm BST release commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 revised to avoid a visit from the apostrophe... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4073 update tests commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure commit | commitdiff | tree | snapshot
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 revised whatsNew to make sense ! commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 release 2.11.2.5 date is 11th Oct commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added... commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 2.11.2.5 release version bump commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 release notes and updated release date for... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-4065 release notes for JAL-4073 JAL-4074 commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4065 release notes for JAL-4014 and JAL-4063 in... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4065 - new release notes featuring JAL-3612 fix commit | commitdiff | tree | snapshot
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... commit | commitdiff | tree | snapshot
2022-08-23 Ben SoaresJAL-4014 JAL-4063 Added gecos colourScheme names (INFO... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch Release_2_11_2_4 commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 release on 9th August 2022 commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting commit | commitdiff | tree | snapshot
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