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jalview.git
2019-02-04 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into Jalview... commit | commitdiff | tree | snapshot
2019-02-04 gmungocJAL-3143 update unit test for ID -> id change feature/JAL-3143ensemblJSON commit | commitdiff | tree | snapshot
2019-02-01 hansonrfix for org.json.JSONObject writing (both in Java and... commit | commitdiff | tree | snapshot
2019-02-01 hansonrremoves unnecessary org.xml.sax; these are in SwingJS commit | commitdiff | tree | snapshot
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile... commit | commitdiff | tree | snapshot
2019-01-31 hansonrSplit pane removing title bar for JInternalFrames commit | commitdiff | tree | snapshot
2019-01-31 hansonrfixes org.json.JSONObject for fully qualified method... commit | commitdiff | tree | snapshot
2019-01-31 hansonrremoves org.json from srcjar commit | commitdiff | tree | snapshot
2019-01-30 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of commit | commitdiff | tree | snapshot
2019-01-30 gmungocJAL-3144 don't change comma to semi-colon if not requested! commit | commitdiff | tree | snapshot
2019-01-30 hansonrwoops. commit | commitdiff | tree | snapshot
2019-01-30 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-30 hansonrFix for textarea not updating value ("value", not ... commit | commitdiff | tree | snapshot
2019-01-30 hansonrfixes unidentified Java problem commit | commitdiff | tree | snapshot
2019-01-30 gmungocJAL-3056 no export as BioJS in JalviewJS commit | commitdiff | tree | snapshot
2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox... commit | commitdiff | tree | snapshot
2019-01-29 hansonrclasspath to include test always commit | commitdiff | tree | snapshot
2019-01-29 hansonrJSON writing fix, JColorChooser (mnemonic change) fix commit | commitdiff | tree | snapshot
2019-01-29 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-29 hansonrtest package fix for List<DBRefEntry> DBrefs (untested) commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser... commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileC... commit | commitdiff | tree | snapshot
2019-01-29 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-29 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into trialMerge commit | commitdiff | tree | snapshot
2019-01-29 gmungocJAL-3143 format alleles array for feature description commit | commitdiff | tree | snapshot
2019-01-29 hansonrFetch Sequences...PDB - all tabs working commit | commitdiff | tree | snapshot
2019-01-29 hansonrexperiment using a register buffer instead of creating... commit | commitdiff | tree | snapshot
2019-01-29 hansonrtiming notes; SwingJS for StringBuilder/Buffer commit | commitdiff | tree | snapshot
2019-01-29 hansonriterators commit | commitdiff | tree | snapshot
2019-01-29 hansonrtime check, iterators commit | commitdiff | tree | snapshot
2019-01-29 hansonrJSON moved to swingjs/json commit | commitdiff | tree | snapshot
2019-01-29 hansonrJSON code moved to swingjs.json.JSON commit | commitdiff | tree | snapshot
2019-01-29 hansonrmore iterators out; some time checks commit | commitdiff | tree | snapshot
2019-01-28 gmungocJAL-3032 revert change to tooltip StringBuilder length commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename... commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 fixed test commit | commitdiff | tree | snapshot
2019-01-26 hansonrfinal timing checks for optimization commit | commitdiff | tree | snapshot
2019-01-26 hansonrPlatform.timecheck calls removed or commented out. commit | commitdiff | tree | snapshot
2019-01-26 hansonrremoving cyclic call commit | commitdiff | tree | snapshot
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff | tree | snapshot
2019-01-26 hansonrtimestamp just before major refactoring in relation... commit | commitdiff | tree | snapshot
2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an... commit | commitdiff | tree | snapshot
2019-01-25 hansonrSwingJS update (maybe nothing?) commit | commitdiff | tree | snapshot
2019-01-25 hansonrtiming code commit | commitdiff | tree | snapshot
2019-01-25 hansonrJSON refactoring commit | commitdiff | tree | snapshot
2019-01-25 hansonrJavaScript browser-based JSON parsing commit | commitdiff | tree | snapshot
2019-01-25 hansonrTiming code commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Change of label (change of '_' character to... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Change of label commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Eclipse re-formatting of file commit | commitdiff | tree | snapshot
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0 commit | commitdiff | tree | snapshot
2019-01-24 hansonradds File..Load Project file for JS commit | commitdiff | tree | snapshot
2019-01-24 hansonrfixes DnD commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse commit | commitdiff | tree | snapshot
2019-01-23 hansonradded _j2sclasslist.txt for buildcore.xml and commit | commitdiff | tree | snapshot
2019-01-23 hansonrMenus close properly, toolips restored commit | commitdiff | tree | snapshot
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc... commit | commitdiff | tree | snapshot
2019-01-23 hansonrmenu, slider work commit | commitdiff | tree | snapshot
2019-01-23 gmungocJAL-3063 correct handling of absent choice element... commit | commitdiff | tree | snapshot
2019-01-22 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2019-01-22 hansonrFloat.isInfinite, popup menus, slider, spinner redux commit | commitdiff | tree | snapshot
2019-01-22 Ben SoaresJAL-3141 Fixed what happens when suffix template has... commit | commitdiff | tree | snapshot
2019-01-22 Ben SoaresJAL-3141 New message translations commit | commitdiff | tree | snapshot
2019-01-22 gmungocTests for methods of Float commit | commitdiff | tree | snapshot
2019-01-22 hansonrrecompiled libs; JSONException fixed, JSlider, JSpinner commit | commitdiff | tree | snapshot
2019-01-21 Ben SoaresJAL-3141 Rejigged the Preferences tab and changed some... commit | commitdiff | tree | snapshot
2019-01-21 hansonradded Platform settings separating mouse use of win... commit | commitdiff | tree | snapshot
2019-01-21 hansonradded Platform settings separating mouse use of win... commit | commitdiff | tree | snapshot
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... commit | commitdiff | tree | snapshot
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... commit | commitdiff | tree | snapshot
2019-01-21 hansonrminor Platform.isAMac() clean up commit | commitdiff | tree | snapshot
2019-01-21 hansonrremoving indirect references to Platform.isAMac() commit | commitdiff | tree | snapshot
2019-01-21 hansonrcomments only commit | commitdiff | tree | snapshot
2019-01-21 Ben SoaresJAL-3141 Fixed tests for new placement of suffix after... commit | commitdiff | tree | snapshot
2019-01-21 hansonrfixes popup issue involving invocation from mousePresse... commit | commitdiff | tree | snapshot
2019-01-21 hansonrmenu update; popup not functioning, though?? Working... commit | commitdiff | tree | snapshot
2019-01-21 hansonrmenu update; popup not functioning, though?? Working... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 removing diagnostic output commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed... commit | commitdiff | tree | snapshot
2019-01-19 hansonrmenu bug preventing closing - recompiled commit | commitdiff | tree | snapshot
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... commit | commitdiff | tree | snapshot
2019-01-18 Jim ProcterMerge branch 'develop' into feature/JAL-3063jaxbNoCastor commit | commitdiff | tree | snapshot
2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation... commit | commitdiff | tree | snapshot
2019-01-18 hansonrmenu bug preventing closing commit | commitdiff | tree | snapshot
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; commit | commitdiff | tree | snapshot
2019-01-17 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... commit | commitdiff | tree | snapshot
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen... commit | commitdiff | tree | snapshot
2019-01-16 Ben SoaresJAL-3141 Remove no longer used exampleLabel commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... commit | commitdiff | tree | snapshot
2019-01-15 hansonrremoval of AlignmentFrame lines commit | commitdiff | tree | snapshot
2019-01-15 hansonrsubimage height error commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 test that changing view association for PCA... features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767 commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 patch buggy PCA view association test commit | commitdiff | tree | snapshot
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