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jalview.git
2011-08-24 jprocterJAL-715 bugfixes and refactor of parsing code for use... commit | commitdiff | tree | snapshot
2011-08-24 jprocterrefactor labelled button creator to JvSwingUtils commit | commitdiff | tree | snapshot
2011-08-23 jprocterJAL-715 - simple tests and functions for IO of service... commit | commitdiff | tree | snapshot
2011-08-23 jprocterJAL-715 - allow rest service attributes to be exported... commit | commitdiff | tree | snapshot
2011-08-21 janengelhardtJAL-913; Extending documentation; VARNA help; commit | commitdiff | tree | snapshot
2011-08-19 janengelhardtJAL-913; Documentation of RNA Structure Conservation commit | commitdiff | tree | snapshot
2011-08-19 jprocterJAL-908 JAL-912 JAL-516 documented annotation HTML... commit | commitdiff | tree | snapshot
2011-08-19 jprocterJAL-908,JAL-701 - patch applet to strip HTML tags from... commit | commitdiff | tree | snapshot
2011-08-19 jprocterJAL-908 JAL-701 refactored HTML escape/unescape code... commit | commitdiff | tree | snapshot
2011-08-18 jproctertestdata for JAL-701 and JAL-908 commit | commitdiff | tree | snapshot
2011-08-18 jprocterremove debug message commit | commitdiff | tree | snapshot
2011-08-18 jprocterfix for JAL-701 - ensure '<' appears in tooltip in... commit | commitdiff | tree | snapshot
2011-08-18 jprocterminor efficiency refactor commit | commitdiff | tree | snapshot
2011-08-18 jprocterJAL-907 testdata for JAL-701 commit | commitdiff | tree | snapshot
2011-08-18 jprocterJAL-907 - test data directory readme commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-853 use service action attribute to index services... commit | commitdiff | tree | snapshot
2011-08-17 jprocterremove any trailing '/' from the URL before validation... commit | commitdiff | tree | snapshot
2011-08-17 jprocteravoid NPE race condition when several threads waiting... commit | commitdiff | tree | snapshot
2011-08-17 jprocterfix for JAL-888 commit | commitdiff | tree | snapshot
2011-08-17 jprocterfix for JAL-888 commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-898 - ensure we only remove a clargs progress bar... commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied... commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-867 - rejigged layout to a single splitpane wide... commit | commitdiff | tree | snapshot
2011-08-16 janengelhardtJAL-842; Text element containing the structure is not... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Tooltips for Structure logos implemented; commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-878; Structures associated to a sequence are availa... commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-750 automaticScrolling is true by default commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-750 - automaticScrolling=true by default. Refactore... commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-747 - warning dialog if Jalview can't resolve filen... commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Labeling of structure conservation is improved... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug... commit | commitdiff | tree | snapshot
2011-08-11 jprocteravoid NPE for null annotation element columns JAL-896 commit | commitdiff | tree | snapshot
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... commit | commitdiff | tree | snapshot
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if... commit | commitdiff | tree | snapshot
2011-08-09 janengelhardtJAL-891; base-pair logos can now be activated for structure commit | commitdiff | tree | snapshot
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi... commit | commitdiff | tree | snapshot
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure... commit | commitdiff | tree | snapshot
2011-08-05 jprocterexample script that will submit a muscle jabaws job... commit | commitdiff | tree | snapshot
2011-08-05 jprocterfetch groovy script from URL (JAL-899) and show progres... commit | commitdiff | tree | snapshot
2011-08-05 jprocterallow several progress bars on the desktop window ... commit | commitdiff | tree | snapshot
2011-08-04 jprocterJAL-896 - patch to ensure arrows in different direction... commit | commitdiff | tree | snapshot
2011-08-04 jprocterJAL-883 - refactored and debugged arrow, stem and helix... commit | commitdiff | tree | snapshot
2011-08-03 jprocterMerge branch 'master' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... commit | commitdiff | tree | snapshot
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... commit | commitdiff | tree | snapshot
2011-08-03 jprocterfix NPE when applets stop. seems to make the simple... commit | commitdiff | tree | snapshot
2011-08-03 janengelhardtJAL-885; Multi-helix bug is solved; One should think... commit | commitdiff | tree | snapshot
2011-08-03 jprocterrefactor schema to group swing window geometry attributes commit | commitdiff | tree | snapshot
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at... commit | commitdiff | tree | snapshot
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... commit | commitdiff | tree | snapshot
2011-07-28 jprocterrefer to local default setting for proxy when connecting to commit | commitdiff | tree | snapshot
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl... commit | commitdiff | tree | snapshot
2011-07-26 jprocterexample alignment for JAL-862 - removed signal peptides commit | commitdiff | tree | snapshot
2011-07-25 jprocteruse proper encoding for storing colour as user preferen... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtsome print statements to test things commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-882; VARNA crashed when non-standard gaps where... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; toy example to insert nucleotides in sequences... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; Implement transmitting of Jalview Sequence... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842: some bugfixes; commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; Added the TextField to edit structure in VARNA commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; trimming single structures for single sequence... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; Give Varna frames name for window organizer... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtVarna external frame bug solved commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtReorganize the class structure, unfortunately breaks... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtclean code commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtFurther structure accessing feature commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtChanged location of VARNAv3-8b.jar; small changes commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtjal-842; sequence transmitting to Varna included commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842, AppVarnaBinding was filled with a minimalistic... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842, Further creation of VARNA classes (probably... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtContainer for VARNA classes are created according to... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Add doc for JalviewRNASupport what was done/todo'... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Help files updated with RNA stuff' merge; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Fix Group Colour bug' merge; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardt'Add Rfam database sequence retrieval' merged; JAL-580 commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtStart merging of Laurens Code commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtNew branch created and author list changed to test... commit | commitdiff | tree | snapshot
2011-07-22 jproctertodo for JAL-860 - associate multiple sequences with... commit | commitdiff | tree | snapshot
2011-07-22 jprocterapplet min/max annotation shading parameter documentati... commit | commitdiff | tree | snapshot
2011-07-22 jprocterensure propagation of colour change on annotation updat... commit | commitdiff | tree | snapshot
2011-07-22 jprocterfix NPE when annotation colourgradient is applied commit | commitdiff | tree | snapshot
2011-07-22 jproctercode style commit | commitdiff | tree | snapshot
2011-07-22 jprocterdefault parameter for colours in annotation shading... commit | commitdiff | tree | snapshot
2011-07-22 jproctermethod to get a user default colour (JAL-234) commit | commitdiff | tree | snapshot
2011-07-21 jprocterretrieve all sequences matching a particular name ... commit | commitdiff | tree | snapshot
2011-07-21 jprocterlocal instance of deployJava script from Sun/Oracle commit | commitdiff | tree | snapshot
2011-07-21 jprocterrefined applet example on examples page commit | commitdiff | tree | snapshot
2011-07-21 jprocterbetter layout and structure display on startup commit | commitdiff | tree | snapshot
2011-07-21 jprocterensure contents of hash is extended JAL-876 commit | commitdiff | tree | snapshot
2011-07-18 jprocterfixed mouseover problem - still need to deal with flick... commit | commitdiff | tree | snapshot
2011-07-10 jprocterprogress when saving state (JAL-870) and hack to trap... commit | commitdiff | tree | snapshot
2011-07-09 jprocterdocumentation for menu item JAL-860 commit | commitdiff | tree | snapshot
2011-07-09 jproctermenu item and constructor to open a bunch of structures... commit | commitdiff | tree | snapshot
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860) commit | commitdiff | tree | snapshot
2011-07-09 jproctertodo re JAL-732 commit | commitdiff | tree | snapshot
2011-07-09 jprocterJAL-868 todo commit | commitdiff | tree | snapshot
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