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jalview.git
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-02-19 gmungocJAL-2629 refactoring of Hmmer preferences commit | commitdiff | tree | snapshot
2018-02-19 gmungocJAL-2629 partial refactoring of Hmmer command classes commit | commitdiff | tree | snapshot
2018-02-19 gmungocJAL-2629 formatting only commit | commitdiff | tree | snapshot
2018-02-15 Jim ProcterJAL-2906 bump release version and cut new release note... commit | commitdiff | tree | snapshot
2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed... commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 merged to spikes-mungo commit | commitdiff | tree | snapshot
2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into featur... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotatio... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 better behaved panel height adjuster commit | commitdiff | tree | snapshot
2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2069 menu item now "Variable colour..." to hint... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2897 formatting change only prior to functional... commit | commitdiff | tree | snapshot
2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressio... commit | commitdiff | tree | snapshot
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterJAL-2858 update release date and rejig what's new message commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 fix what's new commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update latest release notes link in TOC commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2859 release notes commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update release notes commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 release notes for 2.10.3b1 (including revision... commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 bump version number for 2.10.3b1 commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... commit | commitdiff | tree | snapshot
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2018-01-11 kiramtJAL-2662 Updated README task/JAL-2662 commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor() commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc commit | commitdiff | tree | snapshot
2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 missed Castor class commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 missed Castor class commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 and Castor metadata file for latest changes commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 schema and code changes to save colour by... commit | commitdiff | tree | snapshot
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience commit | commitdiff | tree | snapshot
2017-12-11 gmungocJAL-2843 add colour by attribute, and no value colour... commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 example filters added commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 refactor / tidy for feature filter input/output commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 methods relocated commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview feature... commit | commitdiff | tree | snapshot
2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns... commit | commitdiff | tree | snapshot
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest commit | commitdiff | tree | snapshot
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... commit | commitdiff | tree | snapshot
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 refactored to extract specific consequence... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for... commit | commitdiff | tree | snapshot
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added commit | commitdiff | tree | snapshot
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig... commit | commitdiff | tree | snapshot
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 release notes commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
 commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 fix commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2740 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2827 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2842 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop commit | commitdiff | tree | snapshot
2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 update spike to latest commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 refactoring to better handler filter by Score... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 relocate constants for compiler, add COLUMN_CO... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher... commit | commitdiff | tree | snapshot
2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key commit | commitdiff | tree | snapshot
2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
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