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jalview.git
2017-10-12 kjvdheideCustom aptx configuration added commit | commitdiff | tree | snapshot
2017-10-12 kjvdheidemoved Aptx creation from CalculationChooser to separate... commit | commitdiff | tree | snapshot
2017-10-12 kjvdheideCreated test class for Archaeopteryx tree viewing commit | commitdiff | tree | snapshot
2017-10-11 kjvdheideforester as submodule with InternalFrame + start of... commit | commitdiff | tree | snapshot
2017-10-11 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-11 kjvdheidejust a comment commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns... commit | commitdiff | tree | snapshot
2017-10-11 Jim ProcterJAL-2757 release notes commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 minor test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kjvdheideAdded tree building (without distances yet) commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars commit | commitdiff | tree | snapshot
2017-10-10 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-10 kjvdheideStart of programmatically creating Aptx trees commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2523 release notes commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop commit | commitdiff | tree | snapshot
2017-10-09 kjvdheidefixed incorrect panel title commit | commitdiff | tree | snapshot
2017-10-09 kjvdheideStart of creating tree nodes for Aptx commit | commitdiff | tree | snapshot
2017-10-09 kjvdheideFully separated tree GUI from calculation commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 convenience method to get model organisms commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterMerge branch 'patch/JAL-2446_mergeconflictmissed' into... commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. commit | commitdiff | tree | snapshot
2017-10-07 kjvdheideRenaming commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterMerge branch 'patch/JAL-2116_java9_antjnlpfix' into... commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterJAL-2116 fix jnlp file post-processing so java 9 module... commit | commitdiff | tree | snapshot
2017-10-06 kjvdheideStart of creating the objects Archaeopteryx needs commit | commitdiff | tree | snapshot
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response commit | commitdiff | tree | snapshot
2017-10-05 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-05 kjvdheideBlank interfaces added commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2523 start of refactoring... commit | commitdiff | tree | snapshot
2017-10-03 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' into... commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideProper copyright dating added commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideKept copyright test to just the new classes commit | commitdiff | tree | snapshot
2017-10-03 kjvdheideCopyright test commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterMerge branch 'documentation/JAL-2751patch2102b2' into... commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterJAL-2751 what's new for 2.10.2b2 patch commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterJAL-2751 patch release notes commit | commitdiff | tree | snapshot
2017-09-30 Jim ProcterJAL-2751 bump version and new releases entry commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 kjvdheideBegin separation of GUI and tree calculation logic origin/spikes/koen commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 patch tests for https commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 formatting commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 patch tests for https commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 formatting commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org commit | commitdiff | tree | snapshot
2017-09-29 kjvdheideMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... commit | commitdiff | tree | snapshot
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame commit | commitdiff | tree | snapshot
2017-09-27 kjvanderheideproof of concept for passing tree data to archaeopteryx commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2742 uncomment test commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2742 fixed commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... commit | commitdiff | tree | snapshot
2017-09-20 kiramtJAL-2662 Adjustments to hidden columns benchmark commit | commitdiff | tree | snapshot
2017-09-19 kiramtJAL-2662 Updated README commit | commitdiff | tree | snapshot
2017-09-19 kiramtJAL-2737 Checkstyle error fixes commit | commitdiff | tree | snapshot
2017-09-19 kiramtJAL-2622 Tidied up gitignore, added to README commit | commitdiff | tree | snapshot
2017-09-19 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-09-19 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2017-09-18 gmungocMerge remote-tracking branch 'origin/patch/JAL-2732... commit | commitdiff | tree | snapshot
2017-09-18 gmungocJAL-2728 fine tuned initial split of split frame view commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterMerge branch 'documentation/JAL-2698_release2103' into... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-2698 new releases.html entry, whatsNew.html and... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterMerge branch 'bug/JAL-2728splitFrameDivision' into... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1625 ensure we don’t regress on JAL-20 - we always... patch/JAL-2732 commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1625 javadoc commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-2733 redraw after changing the memory status displa... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1625 JAL-1900 preserve the original DesktopManager... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1900 JAL-1625 back out OSX specific double buffer... commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-1551 standard code formatting commit | commitdiff | tree | snapshot
2017-09-15 Jim ProcterJAL-2732 force a redraw after resize/drag to clear... commit | commitdiff | tree | snapshot
2017-09-15 gmungocJAL-2728 use right denominator for min/max ratio calcul... bug/JAL-2728splitFrameDivision commit | commitdiff | tree | snapshot
2017-09-15 gmungocJAL-2728 limit divider to ensure seqs visible (wip!) commit | commitdiff | tree | snapshot
2017-09-15 gmungocJAL-741 add tooltip to feature group checkbox commit | commitdiff | tree | snapshot
2017-09-12 gmungocMerge branch 'bug/JAL-2721fastPaintNPE' into develop commit | commitdiff | tree | snapshot
2017-09-07 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' of... commit | commitdiff | tree | snapshot
2017-09-07 Jim ProcterMerge branch 'bug/JAL-2511idAlignment' into develop commit | commitdiff | tree | snapshot
2017-09-07 Jim ProcterJAL-2511 release notes for 2.10.2b1 commit | commitdiff | tree | snapshot
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