jalview.git
2022-12-08 Ben SoaresJAL-629 Allow attachment of pAE file to a particular...
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments
2022-11-03 Jim ProcterJAL-3855 JAL-4095 simple picking of ranges adjacent...
2022-10-30 Jim ProcterJAL-2349 JAL-3855 bizarre resizing exception when resiz...
2022-10-30 Jim ProcterJAL-4091 lines to associate rows sharing same sequence...
2022-10-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs...
2022-10-29 Jim ProcterJAL-4094 shift+click drag up/down to resize all annotat...
2022-10-29 Jim ProcterJAL-4091 - noodling about including the names for seque...
2022-10-29 Jim ProcterJAL-4090 bump version and set up release notes for...
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect...
2022-10-28 Jim ProcterMerge branch 'bug/JAL-4083_exceptions_for_multiple_resi...
2022-10-28 Jim ProcterJAL-2349 allow contact matrix to provide labels for...
2022-10-28 Jim ProcterJAL-4086 commented out attempt to create measurement...
2022-10-28 Jim ProcterJAL-4089 use column selection to superpose if 4 or...
2022-10-28 Jim ProcterJAL-2961 centerViewOn command for structure viewers...
2022-10-28 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
2022-10-27 Ben SoaresJAL-4083 don't need globalUseScriptWait after all,... bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol
2022-10-27 Ben SoaresJAL-4083 only set globalUseScriptWait if needed
2022-10-27 Ben SoaresJAL-4083 Use jmolViewer.scriptWait instead of jmolViewe...
2022-10-26 Jim ProcterJAL-4086 quick and dirty mouseovers on ruler highlighti...
2022-10-26 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
2022-10-26 Ben SoaresJAL-3416 (and others) increasing number of STDERR lines...
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl...
2022-10-22 Jim ProcterJAL-2349 JAL-3855 highlight residues associated with...
2022-10-21 Jim ProcterJAL-2349 JAL-3855 fix failing tests
2022-10-21 Jim ProcterJAL-2349 JAL-3855 experiment masking hidden columns...
2022-10-21 Jim ProcterJAL-4033 - heuristic threshold for pAE matrix - mark...
2022-10-20 Jim ProcterJAL-2349 formatting/pick correct exception
2022-10-20 Jim ProcterJAL-2349 JAL-3855 off by one and daft return
2022-10-20 Jim ProcterJAL-2349 avoid div-by-zero when annotation height is...
2022-10-20 Jim ProcterJAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont...
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover...
2022-10-20 Jim ProcterJAL-2349 JAL-3855 experimenting with filtering columns...
2022-10-20 Jim ProcterJAL-3855 JAL-2349 AlignmentI.getContactList takes care...
2022-10-20 Jim ProcterJAL-4033 fix drag selections and distinguish row/column...
2022-10-20 Jim ProcterJAL-2349 (still buggy) interactive selection - time...
2022-10-20 Jim ProcterJAL-2349 tooltip reports value from contact range
2022-10-20 Jim ProcterJAL-2349 adjusted range calculation to be inclusive...
2022-10-20 Jim ProcterJAL-2349 debugged click/drag and added yellow rubber...
2022-10-20 Jim ProcterJAL-2349 JAL-3855 - interactive point-wise row/column...
2022-10-20 Jim ProcterJAL-3855 RGB colours from the alphafold paE scale.
2022-10-19 Jim ProcterJAL-2349 JAL-4033 refactored contact matrix geom calc...
2022-10-17 Jim ProcterJAL-2349 JAL-3855 column selection highlighting
2022-10-17 Jim ProcterJAL-3855 bump AF version to 3 - keep contact renderer...
2022-10-17 Jim ProcterJAL-1551 formatting
2022-10-17 Jim ProcterJAL-2349 JAL-3855 tests that probably should be part...
2022-10-17 Jim ProcterJAL-3855 report download errors as errors!
2022-10-17 Jim ProcterJAL-2349 JAL-3855 Integrate pAE retrieval in StructureF...
2022-10-15 Jim ProcterJAL-2349 reusable contact map holder for SequenceI...
2022-10-15 Jim ProcterJAL-3855 2349 TODO
2022-10-15 Jim ProcterJAL-3855 import pAE when StructureSelectionManager...
2022-10-15 Jim ProcterJAL-3855 pAE v2 import
2022-10-14 Jim ProcterJAL-3855 refactor the pAE retrieval code so it can...
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into...
2022-10-14 Jim ProcterMerge branch 'develop' into features/JAL-3895_alphafold... features/JAL-3895_alphafoldcolours
2022-10-11 Jim ProcterJAL-4065 final fix for 2.11.2.5 - 5pm BST release
2022-10-11 Jim ProcterJAL-4065 revised to avoid a visit from the apostrophe...
2022-10-11 Jim ProcterJAL-4073 update tests
2022-10-11 Jim ProcterMerge branch 'develop' of https://source.jalview.org...
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels...
2022-10-11 Jim ProcterJAL-4065 revised whatsNew to make sense !
2022-10-11 Jim ProcterJAL-4065 release 2.11.2.5 date is 11th Oct
2022-10-07 Jim ProcterFix for JAL-4075 - don’t write a label in secondary...
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added...
2022-10-07 Jim ProcterJAL-4065 2.11.2.5 release version bump
2022-10-07 Jim ProcterJAL-4065 release notes and updated release date for...
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL...
2022-10-06 Jim ProcterJAL-1551 formatting
2022-10-06 Jim ProcterJAL-3895 alphafold colours via pluggable annotation...
2022-10-06 Jim ProcterJAL-1551 formatting
2022-10-06 Jim ProcterJAL-4065 release notes for JAL-4073 JAL-4074
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ...
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog...
2022-09-16 Jim ProcterJAL-4065 release notes for JAL-4061 JAL-4062 features/JAL-4061_and_JAL-4062_findselectfeatures
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment...
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels....
2022-09-15 Jim ProcterJAL-4061 use alignment panel’s feature renderer to...
2022-09-15 Jim ProcterJAL-4061 support incremental search of features
2022-09-15 Jim ProcterJAL-4061 tests, bugfixes and TODOs for matching feature...
2022-09-15 Jim ProcterJAL-4062 avc operation and model method for copying...
2022-09-15 Jim ProcterMerge branch 'develop' into features/JAL-4061_and_JAL...
2022-09-15 Jim ProcterJAL-4065 release notes for JAL-4014 and JAL-4063 in...
2022-09-15 Jim ProcterJAL-4065 - new release notes featuring JAL-3612 fix
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering...
2022-09-14 Jim ProcterJAL-4061 JAL-4062 button in Find dialog to copy highlig...
2022-09-14 Jim ProcterJAL-4061 JAL-4062 Find can now search features
2022-08-23 Ben SoaresJAL-4014 JAL-4063 Added gecos colourScheme names (INFO...
2022-08-08 Jim ProcterJAL-4046 release on 9th August 2022
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release
2022-08-08 Jim ProcterJAL-4046 release notes for JAL-3991
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...
2022-08-08 Jim ProcterJAL-4046 release notes for JAL-4014 - gecos colourschemes
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes...
2022-08-08 Jim ProcterJAL-4056 documented in release notes for JAL-4043
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin...
2022-08-08 Jim ProcterJAL-4043 what’s new, updated help images and release...
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee...
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