jalview.git
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-30 tcofoegbuJAL-2074 Improvement to StructureChooser and FTS interf...
2016-06-30 gmungocJAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-06-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-29 tcofoegbuJAL-1479 added test case to elaborate getEntityByMostOp...
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-29 gmungocJAL-1270 avoid overwriting .jalview_properties with...
2016-06-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-29 tcofoegbuJAL-1479 improved Sifts PID calculation for determining...
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc...
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping
2016-06-28 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme...
2016-06-27 gmungoctidied loop with generic iteration / loop variable
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverRefer...
2016-06-27 gmungocJAL-1270 unit tests for HiddenSequences
2016-06-24 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-24 tcofoegbuJAL-1960 updated unit test to include the test case...
2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down...
2016-06-23 Jim ProcterMerge branch 'develop' into merge_JAL-2110
2016-06-23 tcofoegbuJAL-1996 added notes for an alternative way to view...
2016-06-23 Jim ProcterJAL-1270 test group fix
2016-06-23 Jim ProcterJAL-2110 make indirect xref searches work by not filter...
2016-06-23 Jim ProcterJAL-2110 warning message when routine finds non-ds...
2016-06-23 Jim ProcterJAL-2110 clarify javadoc
2016-06-23 Jim ProcterJAL-2110 refactor to split SequenceFetcher from x-ref...
2016-06-23 Jim ProcterJAL-2110 JAL-1551 formatting
2016-06-23 Jim ProcterJAL-2110 enable and fix failing tests
2016-06-23 Jim ProcterJAL-2110 enable and fix test
2016-06-23 Jim ProcterJAL-2110 refactor sequenceFetcherTest to allow verifyin...
2016-06-23 Jim ProcterJAL-2110 use SequenceI.isProtein()
2016-06-23 Jim ProcterJAL-2110 SequenceI.isProtein method
2016-06-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-22 tcofoegbuJAL-1996 added link for viewing example source codes...
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array
2016-06-22 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-06-22 gmungocJAL-1982 defensive test for null array of annotations
2016-06-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-22 tcofoegbuJAL-1996 removed quick links in example pages, added...
2016-06-22 Jim ProcterJAL-2110 remove hardwired detection of search context...
2016-06-21 Jim ProcterMerge branch 'features/JAL-2110_crossRefDuplications...
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-06-21 gmungocJAL-2074 suppress prompt to save closed Groovy script...
2016-06-21 gmungocJAL-1270 remove test artefact file after test
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least...
2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method
2016-06-21 gmungocJAL-2074 reuse Groovy window when reopening; rebind...
2016-06-21 Jim ProcterJAL-2089 cleared out old ‘What’s new’
2016-06-21 Jim ProcterJAL-192 JAL-1369 release notes
2016-06-21 Jim ProcterMerge branch 'features/JAL-1369_refseqproject' into...
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially
2016-06-21 gmungocJAL-2110 updated unit test to match code changes
2016-06-21 Jim ProcterJAL-1369 mark reference sequence & view state and resto...
2016-06-21 Jim ProcterJAL-1369 project XML efficiency TODO
2016-06-21 Jim ProcterJAL-1369 dead code TODO?
2016-06-21 Jim ProcterJAL-1369 ensure *real* alignment’s metadata written...
2016-06-21 Jim ProcterJAL-1369 fix the test
2016-06-21 Jim ProcterJAL-1369 make sure the fake AlignmentI produced by...
2016-06-21 Jim ProcterJAL-1369 HUGE WARNING: datamodel.HiddenSequences is...
2016-06-21 gmungocJAL-2113 tidy up canonicalisation of Uniprot xrefs...
2016-06-21 gmungocJAL-2113 tidy up canonicalisation of Uniprot xrefs...
2016-06-20 Jim ProcterJAL-1369 updated project schema - flag on JSeq to mark...
2016-06-20 Jim ProcterJAL-1369 failing test
2016-06-20 Jim ProcterJAL-1989 JAL-1011 release notes
2016-06-20 Jim ProcterJAL-2086 JAL-2085 release notes
2016-06-20 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-06-20 Jim ProcterJAL-2065 release notes
2016-06-20 Jim ProcterMerge branch 'bugs/JAL-2065' into develop
2016-06-20 Jim ProcterJAL-2065 port patch to applet
2016-06-20 Jim ProcterJAL-1551 tidy
2016-06-20 Jim ProcterJAL-1551 tidy
2016-06-20 Jim ProcterJAL-2065 don’t pass stale group reference
2016-06-20 Jim ProcterJAL-2068 avoid ArrayIndexOutOfBounds when consensus...
2016-06-20 Jim ProcterJAL-2065 check position lies within group before gettin...
2016-06-20 tcofoegbuJAL-1996 added JalviewApplet to download list in applet...
2016-06-20 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-20 tcofoegbuJAL-1823 Deleted two obsolete methods in PopupMenu...
2016-06-20 Jim ProcterMerge branch 'r291_docs' into develop
2016-06-20 Jim ProcterJAL-1812 groovy always present
2016-06-20 Jim ProcterJAL-1812 release notes
2016-06-20 Jim ProcterJAL-1812 documentation TBC for AlignFrame->Calculate...
2016-06-20 Jim ProcterJAL-2089 typo
2016-06-20 Jim ProcterJAL-1868 fix typo in test data.
2016-06-20 Jim ProcterMerge branch 'features/JAL-1812_JAL-2083_groovyBinding...
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol
2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (witho...
2016-06-20 Jim ProcterJAL-2110 pass dataset to makeCDSalignment
2016-06-20 Jim ProcterJAL-2110 catch case when updateDBRef argument has null...
2016-06-20 Jim ProcterJAL-2110 List now used for AlignCodonFrame references
2016-06-20 Jim ProcterJAL-2110 copy alcodonframes only if copy constructor...
2016-06-19 Jim ProcterJAL-2110 distinct alignedcodonframe entries for tests
2016-06-19 Jim ProcterJAL-2110 test alcodonframes must be distinct
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