jalview.git
2024-01-23 James ProcterMerge branch 'develop' into features/JAL-34_comparing_msas features/JAL-34_comparing_msas
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling...
2024-01-23 James ProcterMerge branch 'features/JAL-4366_foldseek_3di_viewing...
2024-01-23 James ProcterJAL-4371 minimal test and move PDBEntryUtils to correct...
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling...
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect...
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor...
2024-01-23 James ProcterMerge branch 'bug/JAL-4368_default_colourscheme_applied...
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch
2024-01-19 Ben SoaresJAL-4373 Fix Main-Class and other attribute settings...
2024-01-18 James ProcterJAL-34 fix up comparison annotation so it gets shown...
2024-01-18 James ProcterJAL-34 mouse over ruler in one alignment highlights...
2024-01-17 James ProcterJAL-34 - quick hack to see how we can do alignment...
2024-01-16 James ProcterJAL-4366 JAL-728 show 3di-Mat based quality in the...
2024-01-16 James ProcterJAL-4366 JAL-728 simple hack to use 3di matrix when...
2024-01-15 James ProcterJAL-4366 JAL-4371 allow cruft after inferred pdb ids...
2024-01-14 James ProcterJAL-4366 JAL-3947 avoid ambiguity for multi character...
2024-01-14 James ProcterJAL-4366 JAL-4371 tighten up detection of chain code...
2024-01-14 James ProcterJAL-4366 revive broken alignDNAasDNA test
2024-01-14 James ProcterJAL-4366 JAL-4371 fix imports
2024-01-14 James ProcterJAL-4366 avoid corrupting map when no complete mapping...
2024-01-14 James ProcterJAL-4366 JAL-4371 refactor and fix up code inferring...
2024-01-12 James ProcterJAL-4366 provide options for updating (or not) the...
2024-01-12 James ProcterJAL-4366 fixed wrinkles in reconstructing peptide align...
2024-01-11 James ProcterJAL-4366 fix reconstruction of peptide alignment...
2024-01-11 James ProcterJAL-4366 test reconstruction of peptide alignment given...
2024-01-11 James ProcterJAL-4366 use dataset sequences for building the mapping
2024-01-11 James ProcterJAL-4371 make the PDB fetcher use simple naming 1xyzA...
2024-01-11 James ProcterJAL-3466 higher ‘crummy alignment’ threshold when decid...
2024-01-11 James ProcterJAL-4366 remove some tortuous repetition in computeMapp...
2024-01-11 James ProcterJAL-4366 incomplete test verifying a 3di alignment...
2024-01-11 James ProcterJAL-4366 new mapping type for 3di/protein sequence...
2024-01-11 James ProcterJAL-4366 allow a 3di alignment to be loaded and shown...
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately
2023-12-17 James ProcterJAL-4366 account for 3dmat matrix in tests
2023-12-16 James ProcterJAL-4366 1:1 mapping requires exact sequence length...
2023-12-16 James ProcterJAL-789 pairwise alignment via calculations dialog...
2023-12-16 James ProcterJAL-4366 mat3di score model
2023-12-15 James ProcterJAL-4366 hacked in a 1:1 mapping
2023-12-15 James ProcterJAL-1551 formatting
2023-12-15 James ProcterJAL-4366 build a mapping to a PDBChain with an arbitrar...
2023-12-15 James ProcterJAL-4366 compute coverage on each side of the pairwise...
2023-12-14 James ProcterJAL-4356 update release notes
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before...
2023-12-14 James ProcterJAL-4217 singleThread all tests
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into...
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling
2023-12-12 Ben SoaresJAL-4353 bigger tighter test
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is...
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_...
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to...
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary...
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-12 James ProcterJAL-4353 failing test
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files...
2023-12-11 James ProcterJAL-4192 more specific info about versions needed
2023-12-06 Ben SoaresJAL-4353 re-used random color code
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal...
2023-12-06 James ProcterJAL-4356 bump RELEASE
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3...
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into...
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into...
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random...
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version...
2023-11-30 James ProcterJAL-4351 update release notes for JAL-4342
2023-11-30 James ProcterMerge branch 'patch/JAL-4342_emptyannotationsexport...
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351
2023-11-30 James ProcterJAL-4351 2.11.3.2 scheduled for 1st December release
2023-11-30 James ProcterMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless...
2023-11-22 James ProcterJAL-4343 fix insufficient-caffeine error - add whats...
2023-11-22 James ProcterJAL-4343 release today, update notes for JAL-4348 and...
2023-11-22 James ProcterMerge branch 'patch/JAL-4345_pae_epas1_doubleclick...
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick
2023-11-20 Ben SoaresJAL-4348 Add newer versions of Chimera and ChimeraX...
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature...
2023-11-17 James ProcterJAL-4343 release notes for JAL-4340 and JAL-4243
2023-11-17 James ProcterJAL-4343 bump version
2023-11-16 Ben SoaresJAL-4243 Updated bio.tools record for 2.11.3.0
2023-11-16 Ben SoaresJAL-4340 Change launch scripts to be xresources to...
2023-11-15 James ProcterJAL-4090 JAL-4334 patch in release notes
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur...
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport...
2023-11-15 James ProcterJAL-4273 actually pass startSeq etc on to rendering...
2023-11-15 James ProcterJAL-4090 fix up release notes new known issues
2023-11-15 James ProcterJAL-4222 bail if we wait too long for Jmol to save... patch/JAL-4222_100s_timeout_on_imagexport
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console...
2023-11-15 James ProcterJAL-4090 JAL-4334 position status when start, end or... bug/JAL-4334_unknownstartenduniprotfeatures
2023-11-15 James ProcterJAL-4090 JAL-4338 known defect
2023-11-15 James ProcterJAL-4090 release 15th November 2023
2023-11-15 James ProcterJAL-4090 JAL-3858 fix up PAE docs - drop the EBI image...
2023-11-13 James ProcterJAL-4090 JAL-1551 source license
2023-11-13 James ProcterJAL-4090 relese date 14th Nov 2023
2023-11-13 James ProcterJAL-4236 don’t look for headers in JalviewJS
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