2022-02-14 |
Jim Procter | JAL-3956 - PDBEntry objects constructed from 3D-Beacons... |
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2022-02-12 |
Jim Procter | Merge branch 'update/JAL-3949_jalview_bin_Console_to_cu... |
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2022-02-12 |
Ben Soares | JAL-3949 fix testProps path and make line count more... update/JAL-3949_jalview_bin_Console_to_cure_sanity_even_more |
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2022-02-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-02-11 |
Jim Procter | JAL-3949 increase command line ops test timeout |
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2022-02-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-02-11 |
Jim Procter | JAL-3949 ensure Jalview command line ops setup actually... |
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2022-02-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-02-11 |
Jim Procter | Merge branch 'update/JAL-3949_jalview_bin_Console_to_cu... |
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2022-02-11 |
Jim Procter | JAL-3931 fix - escape % symbols after urlencoding |
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2022-02-11 |
Ben Soares | Merge branch 'update/JAL-3949_jalview_bin_Console_to_cu... |
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2022-02-11 |
Ben Soares | JLogger loglevel check on whether to call the actual... |
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2022-02-11 |
Jim Procter | JAL-3949 - refactor logging from jalview.bin.Cache... |
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2022-02-11 |
Ben Soares | JAL-3949 fixed failing commandlinetests due to more... |
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2022-02-11 |
Ben Soares | JAL-3949 added Java Console autoscrolling help paragraph |
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2022-02-11 |
Ben Soares | JAL-3949 read ~/.jalview_properties before initialising... |
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2022-02-11 |
Ben Soares | Merge branch 'develop' into update/JAL-3949_abstracted_... |
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2022-02-11 |
Ben Soares | JAL-3949 Complete new abstracted logging framework... |
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2022-02-10 |
Jim Procter | Merge branch 'bug/JAL-3523_cwd_not_preserved' into... |
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2022-02-07 |
Jim Procter | JAL-3186 remove ‘Variable Colour’ from the sequence... |
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2022-02-04 |
Ben Soares | JAL-3949 An attempt at converting to Log4j 2 -- no... |
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2022-02-04 |
Jim Procter | Merge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2 |
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2022-02-04 |
Jim Procter | JAL-3806 JAL-3725 update tests since CDS mappings now... |
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2022-02-04 |
Jim Procter | JAL-3806 require mapping extent covers both sequence... |
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2022-02-03 |
Ben Soares | JAL-3949 upgraded log4j to 2.17.1 (no actual known... |
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2022-02-03 |
Jim Procter | JAL-3806 use the covers() test for each selected sequen... |
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2022-02-03 |
Jim Procter | JAL-3806 use same logic as for mouse over highlighting... |
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2022-02-03 |
Jim Procter | JAL-3806 todo - problem seems to be Protein:Many CDS... |
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2022-02-03 |
Jim Procter | JAL-2305 comments re testFindXrefSequences_withFetch... |
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2022-01-29 |
Ben Soares | JAL-3830 JAL-3420 added new jvl_file to install4j9... |
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2022-01-29 |
Ben Soares | Merge branch 'develop' into improvement/JAL-3830_instal... |
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2022-01-28 |
Ben Soares | Merge branch 'develop' into improvement/JAL-3420_match_... |
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2022-01-28 |
Ben Soares | new jvl_file svg, png, ico and icns files, and changed... |
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2022-01-28 |
Jim Procter | JAL-3137 tests are for linux only |
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2022-01-28 |
Jim Procter | Merge branch 'merge/develop_JAL-3725' into develop |
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2022-01-28 |
Ben Soares | Merge branch 'develop' into JAL-3416_different_look_and... |
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2022-01-27 |
Ben Soares | update to flatlaf 2.0.1 |
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2022-01-27 |
Jim Procter | Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal... |
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2022-01-26 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-01-26 |
Jim Procter | JAL-3763 (for whatever reason) need to increase timeout... |
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2022-01-26 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-01-26 |
Jim Procter | JAL-3746 note about adding JAL-3700,JAL-3751,JAL-3763... |
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2022-01-26 |
Jim Procter | Merge branch 'merge/develop_task/JAL-3763_newDatasetFor... |
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2022-01-26 |
Jim Procter | JAL-3763 (for whatever reason) need to increase timeout... merge/develop_task/JAL-3763_newDatasetForCds |
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2022-01-26 |
Jim Procter | Merge branch 'task/JAL-3763_newDatasetForCds' into... |
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2022-01-26 |
gmungoc | JAL-3806 (2.11.2 version) more lax allowance (3 positio... |
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2022-01-26 |
Jim Procter | JAL-3806 JAL-3725 propagate relaxed criteria for stop... |
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2022-01-26 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
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2022-01-26 |
gmungoc | JAL-3725 helper methods for computing mapped feature... |
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2022-01-26 |
gmungoc | JAL-3725 exclude stop codon from CDS-to-protein mapping |
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2022-01-26 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-01-26 |
Jim Procter | Merge branch 'releases/Release_2_11_1_Branch' |
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2022-01-18 |
Jim Procter | JAL-3940 update 2.11.2 release notes for 2.11.1.7 patch... |
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2022-01-18 |
Jim Procter | JAL-3940 errant heading in release notes.. releases/Release_2_11_1_Branch Release_2_11_1_7 |
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2022-01-18 |
Jim Procter | Merge branch 'patch/r2_11_1_branch_JAL-3703_closing_fil... |
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2022-01-17 |
Jim Procter | JAL-3703 patch Windows save file test for 2.11.1 codebase patch/r2_11_1_branch_JAL-3703_closing_files |
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2022-01-17 |
Jim Procter | Merge branch 'patch/r2_11_1_branch_JAL-3703_closing_fil... |
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2022-01-17 |
Jim Procter | JAL-3940 fix issues in release notes |
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2022-01-17 |
Jim Procter | JAL-3940 update 2.11.2 release notes for 2.11.1.7 patch... |
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2022-01-17 |
Jim Procter | JAL-3940 bump version and update release notes - releas... |
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2022-01-17 |
Jim Procter | JAL-3940 update release notes for JAL-3702,JAL-3935... |
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2022-01-17 |
Ben Soares | JAL-3703 Test that fails in Windows only, and only... |
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2022-01-17 |
Ben Soares | JAL-3703 fix Gff3 shared InputStream with embedded... |
commit | commitdiff | tree | snapshot |
2022-01-17 |
Ben Soares | close filehandles straight after parse, without setting... |
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2022-01-17 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-01-17 |
Jim Procter | JAL-3746 possible release date 1st Feb 2022 |
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2022-01-17 |
Jim Procter | JAL-3746 Release notes for patch JAL-3702 JAL-3915 |
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2022-01-17 |
Jim Procter | Merge branch 'bug/JAL-3703_saving_a_file_in_Windows_10_... |
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2022-01-12 |
Ben Soares | JAL-3703 Test that fails in Windows only, and only... |
commit | commitdiff | tree | snapshot |
2022-01-11 |
Ben Soares | JAL-3703 fix Gff3 shared InputStream with embedded... |
commit | commitdiff | tree | snapshot |
2022-01-11 |
Ben Soares | close filehandles straight after parse, without setting... |
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2022-01-11 |
Ben Soares | JAL-3937 update releases.html |
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2022-01-10 |
Ben Soares | JAL-3937 enable AIA download of intermediate certificat... |
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2022-01-10 |
Ben Soares | JAL-3937 enable AIA download of intermediate certificat... |
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2022-01-06 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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2022-01-06 |
Jim Procter | JAL-3746 update release history for 2.11.1.5 and 2... |
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2022-01-06 |
Jim Procter | JAL-3934 update whats new Release_2_11_1_6 |
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2022-01-06 |
Jim Procter | Merge branch 'critical/JAL-3933_log4j_update_for_develo... |
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2022-01-06 |
Jim Procter | Merge branch 'task/JAL-3934_update_log4j_again' into... |
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2022-01-06 |
Jim Procter | JAL-3934 trigger patch release for log4j version bump |
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2021-12-22 |
Ben Soares | Merge branch 'develop' into critical/JAL-3933_log4j_upd... |
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2021-12-22 |
Ben Soares | JAL-3934 updated log4j from 2.16.0 to 2.17.0 |
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2021-12-22 |
Ben Soares | JAL-3934 updated log4j from 2.16.0 to 2.17.0 |
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2021-12-22 |
Jim Procter | Merge branch 'releases/Release_2_11_1_Branch' |
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2021-12-20 |
Jim Procter | JAL-3842 remove replacement tokens in html text - not... Release_2_11_1_5 |
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2021-12-20 |
Jim Procter | JAL-3842 patch what’s new text |
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2021-12-20 |
Jim Procter | JAL-3842 release 2.11.1.5 release notes |
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2021-12-20 |
Jim Procter | Merge branch 'critical/JAL-3933_log4shell_mitigation... |
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2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS |
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2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS |
commit | commitdiff | tree | snapshot |
2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS |
commit | commitdiff | tree | snapshot |
2021-12-15 |
Ben Soares | JAL-3933 updated THIRDPARTYLIBS |
commit | commitdiff | tree | snapshot |
2021-12-15 |
Jim Procter | JAL-3933 remove obsolete Castor logging configuration |
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2021-12-15 |
Jim Procter | JAL-3933 configure root logger console appender to... |
commit | commitdiff | tree | snapshot |
2021-12-15 |
Jim Procter | JAL-3933 remove obsolete Castor logging configuration |
commit | commitdiff | tree | snapshot |
2021-12-15 |
Jim Procter | JAL-3933 configure root logger console appender to... |
commit | commitdiff | tree | snapshot |
2021-12-14 |
Ben Soares | JAL-3933 updated log4j and slf4j jars with log4j1.2... |
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2021-12-14 |
Ben Soares | JAL-3933 updated slf4j to 1.7.32 |
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2021-12-14 |
Ben Soares | JAL-3933 Updated log4j jars with log4j-2.16.0 and compa... |
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2021-12-13 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_2_Branch |
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next |