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jalview.git
2023-06-29 Ben SoaresJAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux commit | commitdiff | tree | snapshot
2023-06-28 Ben SoaresJAL-4214 Make modal internal frame disappear when main... commit | commitdiff | tree | snapshot
2023-06-28 Ben SoaresJAL-4214 Close modal internal frame if JRootPane activi... commit | commitdiff | tree | snapshot
2023-06-27 Ben SoaresJAL-3416 Don't forget java bin in the correct java... commit | commitdiff | tree | snapshot
2023-06-22 Ben SoaresJAL-4019 corrected to '>' to '>=' for percentage compar... bug/JAL-4125_flatlaf_quithandler_external_structureviewers_not_closed commit | commitdiff | tree | snapshot
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising commit | commitdiff | tree | snapshot
2023-06-16 Ben SoaresJAL-4001 make page_location the same encoding as the... commit | commitdiff | tree | snapshot
2023-06-15 Ben SoaresJAL-4001 Changed for Java 8 compatibility commit | commitdiff | tree | snapshot
2023-06-14 Ben SoaresJAL-4001 Trying to see extra information in GA dashboard commit | commitdiff | tree | snapshot
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-13 Ben SoaresJAL-3599 Tidyup for all OS to use ScheduledExecutor commit | commitdiff | tree | snapshot
2023-06-12 Ben SoaresJAL-3599 replaced a build dependency for jalviewjsLaunc... commit | commitdiff | tree | snapshot
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. ScheduledExecutor timeout... commit | commitdiff | tree | snapshot
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. --timeout not working yet commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 fixed placement of 'First Run' file for chromi... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 --no-sandbox --disable-gpu and Thorium flatpak... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 STDOUT and STDERR saved and sent to System... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 Not redirecting STDOUT or STDERR just for... commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when anything commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when failed commit | commitdiff | tree | snapshot
2023-06-09 Ben SoaresJAL-3599 increase real and virtual time chrome runs... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresJAL-4001 Only send defaultParams for application_launch... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterMerge branch 'develop' into patch/JAL-4196_structure_vi... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterJAL-4196 make very sure we avoid CME by defensively... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterJAL-4196 report an error if structure view doesn’t... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresJAL-3416 FlatLaf SystemInfo failing in JalviewJS. ... commit | commitdiff | tree | snapshot
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-08 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 Javadoc for the method to use commit | commitdiff | tree | snapshot
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... commit | commitdiff | tree | snapshot
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... commit | commitdiff | tree | snapshot
2023-06-07 James ProcterJAL-4195 catch thrown exceptions (if any) during image... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... improvement/JAL-4193_cl_arg_prevent_startup_file commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 Added more params for application_launch commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 removed a test param commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin... commit | commitdiff | tree | snapshot
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4160 JAL-4195 wait around until alignFrame calculat... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-1551 formatting and javadoc for ArgParser rather... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-629 - remove TODO from jalview.bin.Jalview since... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-4195 Debug message indicating creation of an image... commit | commitdiff | tree | snapshot
2023-06-06 James ProcterJAL-1551 a bit of javadoc for Jalview.testoutput methods commit | commitdiff | tree | snapshot
2023-06-05 Ben SoaresJAL-4001 debugging statements commit | commitdiff | tree | snapshot
2023-06-05 Ben SoaresJAL-4001 untested GA4 client code commit | commitdiff | tree | snapshot
2023-06-05 Ben SoaresJAL-4001 most of google analytics client commit | commitdiff | tree | snapshot
2023-06-05 Ben SoaresJAL-4001 start of GA4 client class commit | commitdiff | tree | snapshot
2023-06-02 James ProcterJAL-4090 update 2.11.3.0 release notes for recent merges commit | commitdiff | tree | snapshot
2023-06-02 Ben SoaresJAL-3521 Updated debian build.gradle in utils/debian... commit | commitdiff | tree | snapshot
2023-06-02 Ben SoaresJAL-4001 Spanish translation commit | commitdiff | tree | snapshot
2023-06-02 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresJAL-629 changes merged in from develop fixed it. Delet... commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresJAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt... commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresJAL-4001 Changed title+message to MessageManager commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresJAL-629 added data for test commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... commit | commitdiff | tree | snapshot
2023-06-01 James ProcterMerge branch 'features/JAL-4134_use_annotation_row_for_... commit | commitdiff | tree | snapshot
2023-06-01 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff | tree | snapshot
2023-06-01 James ProcterJAL-4134 properly resolve positions in associated align... features/JAL-4134_use_annotation_row_for_colours_and_groups commit | commitdiff | tree | snapshot
2023-06-01 Ben SoaresJAL-629 better reference text for --nousagestats commit | commitdiff | tree | snapshot
2023-05-30 James ProcterJAL-4134 repaint the tree or alignment view(s) when... commit | commitdiff | tree | snapshot
2023-05-30 James ProcterJAL-4134 highlight selected column nodes on the linked... commit | commitdiff | tree | snapshot
2023-05-30 Ben SoaresJAL-629 JAL-4121 Added documentation to Help docs and... commit | commitdiff | tree | snapshot
2023-05-30 Ben SoaresJAL-4121 adjust test name commit | commitdiff | tree | snapshot
2023-05-30 Ben SoaresJAL-629 Better formatting of Arg.Opt options in usage... commit | commitdiff | tree | snapshot
2023-05-30 Ben SoaresJAL-4121 slight refactoring of method name and added... commit | commitdiff | tree | snapshot
2023-05-29 James ProcterJAL-4190 - escape clears selected nodes commit | commitdiff | tree | snapshot
2023-05-29 James ProcterJAL-4134 JAL-2349 test & fixed implementation(ish)... commit | commitdiff | tree | snapshot
2023-05-29 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff | tree | snapshot
2023-05-27 Ben SoaresJAL-4121 Added a NPE check caught in tests. Added ... commit | commitdiff | tree | snapshot
2023-05-27 Ben SoaresJAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt... commit | commitdiff | tree | snapshot
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added... commit | commitdiff | tree | snapshot
2023-05-26 James ProcterJAL-4134 internationalise popup menu entries and show... commit | commitdiff | tree | snapshot
2023-05-26 James ProcterJAL-1556 fix bad import commit | commitdiff | tree | snapshot
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... commit | commitdiff | tree | snapshot
2023-05-26 James ProcterJAL-1556 initial implementation - no tests as yet but... commit | commitdiff | tree | snapshot
2023-05-26 Ben SoaresJAL-629 dispose of non-displaying StructureChooser... commit | commitdiff | tree | snapshot
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3416 JAL-3820 FlatLaf default for everyone, includi... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3416 better path name commit | commitdiff | tree | snapshot
2023-05-25 James ProcterJAL-4134 popup menu and annotation row property to... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3820 JAL-3830 improvements to script launching... commit | commitdiff | tree | snapshot
2023-05-25 James ProcterJAL-2381 don’t need to set description, dbrefs etc... commit | commitdiff | tree | snapshot
2023-05-25 James ProcterJAL-2381 copy and paste sequence also copies contact... commit | commitdiff | tree | snapshot
2023-05-25 James ProcterMerge branch 'bug/JAL-4186_space_in_sequence_name_cause... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3416 remove old flatlaf jars from j8lib commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-4186 fixed a test commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... commit | commitdiff | tree | snapshot
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