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jalview.git
2016-07-01
gmungoc
JAL-2110 add 'products' parameter to filter results...
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2016-07-01
gmungoc
JAL-2110 code/comment tidy
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2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
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2016-06-30
tcofoegbu
JAL-2074 Improvement to StructureChooser and FTS interf...
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2016-06-30
gmungoc
JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
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2016-06-30
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
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2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
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2016-06-29
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-29
tcofoegbu
JAL-1479 added test case to elaborate getEntityByMostOp...
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2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
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2016-06-29
gmungoc
JAL-1270 avoid overwriting .jalview_properties with...
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2016-06-29
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-29
tcofoegbu
JAL-1479 improved Sifts PID calculation for determining...
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2016-06-29
gmungoc
Merge branch 'develop' into features/JAL-2110_crossRefD...
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2016-06-29
gmungoc
JAL-1369 fix bug reloading a project with group sequenc...
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2016-06-28
tcofoegbu
JAL-1479 minor refactor and housekeeping
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2016-06-28
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-28
tcofoegbu
JAL-1479 improved SiftsClient test coverage and impleme...
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2016-06-27
gmungoc
tidied loop with generic iteration / loop variable
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2016-06-27
gmungoc
JAL-2133 refactored duplicated code to AlignmentViewport
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2016-06-27
gmungoc
JAL-1369 additional asserts in testStoreAndRecoverRefer...
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2016-06-27
gmungoc
JAL-1270 unit tests for HiddenSequences
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2016-06-24
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-24
tcofoegbu
JAL-1960 updated unit test to include the test case...
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2016-06-23
gmungoc
JAL-2130 now simply viewer.dispose() to close down...
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2016-06-23
Jim Procter
Merge branch 'develop' into merge_JAL-2110
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2016-06-23
tcofoegbu
JAL-1996 added notes for an alternative way to view...
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2016-06-23
Jim Procter
JAL-1270 test group fix
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2016-06-23
Jim Procter
JAL-2110 make indirect xref searches work by not filter...
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2016-06-23
Jim Procter
JAL-2110 warning message when routine finds non-ds...
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2016-06-23
Jim Procter
JAL-2110 clarify javadoc
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2016-06-23
Jim Procter
JAL-2110 refactor to split SequenceFetcher from x-ref...
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2016-06-23
Jim Procter
JAL-2110 JAL-1551 formatting
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2016-06-23
Jim Procter
JAL-2110 enable and fix failing tests
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2016-06-23
Jim Procter
JAL-2110 enable and fix test
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2016-06-23
Jim Procter
JAL-2110 refactor sequenceFetcherTest to allow verifyin...
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2016-06-23
Jim Procter
JAL-2110 use SequenceI.isProtein()
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2016-06-23
Jim Procter
JAL-2110 SequenceI.isProtein method
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2016-06-22
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-22
tcofoegbu
JAL-1996 added link for viewing example source codes...
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2016-06-22
gmungoc
JAL-2015 fixed bug in copy constructor and added tests
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2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
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2016-06-22
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-06-22
gmungoc
JAL-1982 defensive test for null array of annotations
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2016-06-22
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-22
tcofoegbu
JAL-1996 removed quick links in example pages, added...
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2016-06-22
Jim Procter
JAL-2110 remove hardwired detection of search context...
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2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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2016-06-21
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-06-21
gmungoc
JAL-2074 suppress prompt to save closed Groovy script...
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2016-06-21
gmungoc
JAL-1270 remove test artefact file after test
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2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
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2016-06-21
Jim Procter
JAL-1270 ensure before/after clauses have at least...
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2016-06-21
gmungoc
JAL-1270 added runAlways=true to setUp method
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2016-06-21
gmungoc
JAL-2074 reuse Groovy window when reopening; rebind...
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2016-06-21
Jim Procter
JAL-2089 cleared out old ‘What’s new’
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2016-06-21
Jim Procter
JAL-192 JAL-1369 release notes
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2016-06-21
Jim Procter
Merge branch 'features/JAL-1369_refseqproject' into...
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2016-06-21
Jim Procter
JAL-1369 make sure desktop is cleared before test starts
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2016-06-21
Jim Procter
JAL-1369 jalview2xml tests need to be run sequentially
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2016-06-21
gmungoc
JAL-2110 updated unit test to match code changes
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2016-06-21
Jim Procter
JAL-1369 mark reference sequence & view state and resto...
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2016-06-21
Jim Procter
JAL-1369 project XML efficiency TODO
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2016-06-21
Jim Procter
JAL-1369 dead code TODO?
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2016-06-21
Jim Procter
JAL-1369 ensure *real* alignment’s metadata written...
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2016-06-21
Jim Procter
JAL-1369 fix the test
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2016-06-21
Jim Procter
JAL-1369 make sure the fake AlignmentI produced by...
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2016-06-21
Jim Procter
JAL-1369 HUGE WARNING: datamodel.HiddenSequences is...
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2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
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2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
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2016-06-20
Jim Procter
JAL-1369 updated project schema - flag on JSeq to mark...
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2016-06-20
Jim Procter
JAL-1369 failing test
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2016-06-20
Jim Procter
JAL-1989 JAL-1011 release notes
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2016-06-20
Jim Procter
JAL-2086 JAL-2085 release notes
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2016-06-20
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-06-20
Jim Procter
JAL-2065 release notes
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2016-06-20
Jim Procter
Merge branch 'bugs/JAL-2065' into develop
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2016-06-20
Jim Procter
JAL-2065 port patch to applet
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2016-06-20
Jim Procter
JAL-1551 tidy
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2016-06-20
Jim Procter
JAL-1551 tidy
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2016-06-20
Jim Procter
JAL-2065 don’t pass stale group reference
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2016-06-20
Jim Procter
JAL-2068 avoid ArrayIndexOutOfBounds when consensus...
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2016-06-20
Jim Procter
JAL-2065 check position lies within group before gettin...
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2016-06-20
tcofoegbu
JAL-1996 added JalviewApplet to download list in applet...
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2016-06-20
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2016-06-20
tcofoegbu
JAL-1823 Deleted two obsolete methods in PopupMenu...
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2016-06-20
Jim Procter
Merge branch 'r291_docs' into develop
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2016-06-20
Jim Procter
JAL-1812 groovy always present
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2016-06-20
Jim Procter
JAL-1812 release notes
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2016-06-20
Jim Procter
JAL-1812 documentation TBC for AlignFrame->Calculate...
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2016-06-20
Jim Procter
JAL-2089 typo
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2016-06-20
Jim Procter
JAL-1868 fix typo in test data.
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2016-06-20
Jim Procter
Merge branch 'features/JAL-1812_JAL-2083_groovyBinding...
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2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
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2016-06-20
gmungoc
JAL-2130 call viewer.dispose() on closing Jmol
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2016-06-20
gmungoc
JAL-1667 updated PDB example query to a valid id (witho...
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2016-06-20
Jim Procter
JAL-2110 pass dataset to makeCDSalignment
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2016-06-20
Jim Procter
JAL-2110 catch case when updateDBRef argument has null...
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2016-06-20
Jim Procter
JAL-2110 List now used for AlignCodonFrame references
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2016-06-20
Jim Procter
JAL-2110 copy alcodonframes only if copy constructor...
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