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jalview.git
2015-10-08 gmungocJAL-1499 consistent use of FileFormatException commit | commitdiff | tree | snapshot
2015-10-08 gmungocJAL-1499 convert unsupported gap character to '-' commit | commitdiff | tree | snapshot
2015-10-07 gmungocJAL-1499 parsing !Label statements to AlignmentAnnotation commit | commitdiff | tree | snapshot
2015-10-07 gmungocJAL-1499 test code refactor / tidy commit | commitdiff | tree | snapshot
2015-10-07 gmungocJAL-1499 refactored processGeneOrDomain, expanded test commit | commitdiff | tree | snapshot
2015-10-07 gmungocJAL-1499 corrected domainend parsing, add gene name... commit | commitdiff | tree | snapshot
2015-10-06 gmungocJAL-1499 improved parsing of !Domain and !Gene including commit | commitdiff | tree | snapshot
2015-10-01 gmungocJAL-1499 parse !Gene statements to SequenceFeature commit | commitdiff | tree | snapshot
2015-10-01 gmungocJAL-1499 tests with gaps; NSites = width commit | commitdiff | tree | snapshot
2015-10-01 gmungocJAL-1499 parse files with position number comments... commit | commitdiff | tree | snapshot
2015-10-01 gmungocJAL-1499 replace identity symbols when parsing commit | commitdiff | tree | snapshot
2015-10-01 gmungocJAL-1499 write position numbers at end of each line... commit | commitdiff | tree | snapshot
2015-10-01 gmungocJAL-1499 tweak output format for Description commit | commitdiff | tree | snapshot
2015-09-30 gmungocJAL-1499 initial tests working, can export to / import... commit | commitdiff | tree | snapshot
2015-09-29 gmungocJAL-1499 first pass update of parsing and tests, more... commit | commitdiff | tree | snapshot
2015-09-28 gmungocJAL-1499 MEGA format, JAL-1421 List<String> url links commit | commitdiff | tree | snapshot
2015-09-28 gmungocJAL-1499 "MEGA" text label commit | commitdiff | tree | snapshot
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after... commit | commitdiff | tree | snapshot
2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more respon... commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbuJAL-1907 bugfix for NPE while parsing a features file commit | commitdiff | tree | snapshot
2015-09-25 gmungocJAL-1815 restore split frame geometry correctly includi... commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbuJAL-1860 disabled default enter behaviour on pdb search... commit | commitdiff | tree | snapshot
2015-09-24 gmungocJAL-1905 parse url including & correctly commit | commitdiff | tree | snapshot
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbuJAL-1860 only allow enter key when valid selection... commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbuJAL-1860 keyboard operation of pdb sequence fetcher... commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... commit | commitdiff | tree | snapshot
2015-09-22 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-09-22 Jim ProcterJAL-1894 update RELEASE for 2.9.0b1 release commit | commitdiff | tree | snapshot
2015-09-22 gmungocJAL-1894 release notes updated commit | commitdiff | tree | snapshot
2015-09-22 gmungocJAL-1424 tidied output commit | commitdiff | tree | snapshot
2015-09-22 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-22 tcofoegbuJAL-1774 house keeping commit | commitdiff | tree | snapshot
2015-09-22 gmungocJAL-1859 adding "set hoverDelay 0.001;" to Jmol startup... commit | commitdiff | tree | snapshot
2015-09-21 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather... commit | commitdiff | tree | snapshot
2015-09-21 gmungocJAL-1892 duplicate entry removed commit | commitdiff | tree | snapshot
2015-09-21 gmungocJAL-1799 update height of annotation labels to match... commit | commitdiff | tree | snapshot
2015-09-21 gmungocJAL-1892 Spanish additions for Jalview 2.9 commit | commitdiff | tree | snapshot
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence... commit | commitdiff | tree | snapshot
2015-09-21 gmungocJAL-1152 small change to match revised annotation sorti... commit | commitdiff | tree | snapshot
2015-09-21 gmungocJAL-1619 obsolete help removed commit | commitdiff | tree | snapshot
2015-09-18 gmungocJAL-1270 disable test as not really a test and goes... commit | commitdiff | tree | snapshot
2015-09-18 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-18 gmungocJAL-1805 typo corrected commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1889 wrong clean for buildTest! commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1270 JAL-1889 move the stevesoft test back into... commit | commitdiff | tree | snapshot
2015-09-18 gmungocJAL-1788 typos corrected commit | commitdiff | tree | snapshot
2015-09-18 gmungocJAL-1788 broken href fixed commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1889 remove non-UTF8 characters so we can build... commit | commitdiff | tree | snapshot
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl... commit | commitdiff | tree | snapshot
2015-09-18 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-18 tcofoegbuJAL-1506 revised implementation to clear only selected... commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1888 updated documentation for unit testing in... commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1888 set verbosity and exclude the 'parallel' attri... commit | commitdiff | tree | snapshot
2015-09-18 gmungocJAL-1859 reinstated full path to file option (for local... commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1888 JAL-1551 format XML file (2 spaces, no tabs... commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1888 compile tests to separate directory and pass... commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1888 documentation for testing target commit | commitdiff | tree | snapshot
2015-09-18 Jim ProcterJAL-1888 property to specify which testng groups should... commit | commitdiff | tree | snapshot
2015-09-18 gmungocJAL-1424 Ant task to report missing language bundle... commit | commitdiff | tree | snapshot
2015-09-17 tcofoegbuJAL-1774 bugfix for misleading message after trying... commit | commitdiff | tree | snapshot
2015-09-16 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix commit | commitdiff | tree | snapshot
2015-09-16 Jim ProcterMerge branch 'JAL-1612_JAL-1439_JAL-1845_osx_icons_sign... commit | commitdiff | tree | snapshot
2015-09-16 Jim ProcterJAL-1612 JAL-1439 JAL-1845 OSX Installers set Xdock... commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with membe... commit | commitdiff | tree | snapshot
2015-09-16 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus... commit | commitdiff | tree | snapshot
2015-09-16 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-16 tcofoegbuJAL-1881 Bugfix for annotation import from BioJS commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1684 typo correction commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 removed temporary test copy of pdb file commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils... commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 try 1gaq.txt in /lang so it is in the built jar commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 debug logging removed commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 revert to resolving full path to PDB file commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as... commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 temporary debug output commit | commitdiff | tree | snapshot
2015-09-15 gmungocJAL-1859 use unresolved PDB filename commit | commitdiff | tree | snapshot
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase commit | commitdiff | tree | snapshot
2015-09-15 gmungocJAL-1859 refactoring / debugging added commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1270 test added for separatorListToArray commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1684 align added alignment to match original in... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1684 align added alignment to match original in... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame commit | commitdiff | tree | snapshot
2015-09-11 Jim ProcterJAL-1884 add the JNLP template to jalview_jnlp_vm.jar commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 fix broken link in docs commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 reformat help html - 2 spaces indents, no... commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for help html commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for doc directory files commit | commitdiff | tree | snapshot
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