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jalview.git
3 days ago Ben SoaresJAL-4380 Added information to annotation tooltips when... commit | commitdiff | tree | snapshot
6 days ago James ProcterMerge branch 'patch/fix_JAL-4470_JAL-4471_for_2_11_4_1... commit | commitdiff | tree | snapshot
2024-10-04 Jim ProcterJAL-4473 whatsNew 2.11.4.1 patch/fix_JAL-4470_JAL-4471_for_2_11_4_1 commit | commitdiff | tree | snapshot
2024-10-04 Jim ProcterJAL-4473 new jalview patch release commit | commitdiff | tree | snapshot
2024-10-04 Jim Procterfix for JAL-4471 - secondary structure similarity tree... commit | commitdiff | tree | snapshot
2024-10-04 Jim ProcterJAL-4470 fix: check for workers!=null before checking... commit | commitdiff | tree | snapshot
2024-09-18 Jim ProcterJAL-4418 release notes typos commit | commitdiff | tree | snapshot
2024-09-18 Jim ProcterJAL-4418 bump release date to 18th September 2024 commit | commitdiff | tree | snapshot
2024-09-18 Jim ProcterJAL-4418 fix up help TOC copypaste error commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 more documentation tweaks - getting Jen Flemin... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4428 CHANNEL=RELEASE has a different path... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 fix link case for linkcheck and window menu... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4159 pasimap viewer image for docs commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4090 known defect report for JAL-4349 commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4414 JAL-1054 fix irrelevant failing network test... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterMerge branch 'bug/JAL-1054_broken_test' into develop commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 documentation for 4461 commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 documentation for ss annotation row preference... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4442 quit racecondition patch commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterMerge branch 'JAL-4442_cant_quit_jalview_on_windows_11... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 release 2.11.4.0 today! commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4392 show/hide group associated secondary... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterMerge branch 'improvement/JAL-4461_select_format_from_e... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterJAL-4392 JAL-4425 commented out code to allow consensus... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterMerge branch 'patch/JAL-4392_hide_ssconsensus_if_no_dat... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterJAL-4392 autohide the secondary structure consensus... patch/JAL-4392_hide_ssconsensus_if_no_data commit | commitdiff | tree | snapshot
2024-09-16 Renia CorreyaJAL-4427 Added test cases and a minor correction bug/JAL-4427_HTML_code_in_sequence_ID_text commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterJAL-4392 don't show SS consensus for DNA alignments commit | commitdiff | tree | snapshot
2024-09-16 Ben SoaresJAL-4461 Move SwingUtils to darrylbu.util.SwingUtils... improvement/JAL-4461_select_format_from_extension commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterJAL-4418 release notes for JAL-4461 - nb need to docume... commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterMerge branch 'improvement/JAL-4461_select_format_from_e... commit | commitdiff | tree | snapshot
2024-09-13 Ben SoaresJAL-4461 Tests for JalviewFileChooser.defaultSaveFileFo... commit | commitdiff | tree | snapshot
2024-09-13 Ben SoaresJAL-4461 Adding in a number of properties that control... commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterJAL-4418 sign off JAL-4454 and convert markdown header... commit | commitdiff | tree | snapshot
2024-09-13 Ben SoaresJAL-4461 Change JalviewFileFilter to use LinkedHashSet... commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterJAL-4418 sign off JAL-4427 JAL-4451 fix commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff | tree | snapshot
2024-09-12 Ben SoaresJAL-4461 Added a dynamic tooltip to give more informati... commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterJAL-4461 fix up formatting and remove old comment commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterJAL-4461 after autodetection, update the filechooser... commit | commitdiff | tree | snapshot
2024-09-12 Ben SoaresJAL-4461 Change labelling of All-known-alignment-files... commit | commitdiff | tree | snapshot
2024-09-12 Ben SoaresJAL-4460 Don't display the All-known-alignment-files... bug/JAL-4460_alignment_save_as_format_not_registering commit | commitdiff | tree | snapshot
2024-09-12 Jim Procter JAL-4454 make sure 2.11.4.0-test is stripped - *for... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4418 release notes for JAL-4460 commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterMerge branch 'bug/JAL-4460_alignment_save_as_format_not... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4454 make sure 2.11.4.0-test is stripped commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4460 In save as, set format from file extension... commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4460 Don't add .aln for an 'All known formats.... commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4460 Update currentFileFormat /after/ new format... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4418 JAL-4428,JAL-4421,JAL-3393 release notes commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterMerge branch 'patch/JAL-4428_osx_codesigning_scripts... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4428 codesign jnilibs commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4428 informational output (possibly needs verbosity... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4428 giving another XXX commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4428 add some XXXX for mktemp -t commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4428 Fixes to -z's and mktemp commit | commitdiff | tree | snapshot
2024-09-10 Jim ProcterMerge branch 'patch/JAL-4428_osx_codesigning_scripts... commit | commitdiff | tree | snapshot
2024-09-10 Jim ProcterJAL-4454 allow channels to pick up most recent 'whatsNe... commit | commitdiff | tree | snapshot
2024-09-09 Jim ProcterJAL-4418 initial pasimap documentation and updated... commit | commitdiff | tree | snapshot
2024-09-09 Jim ProcterJAL-4418 postpone release to Thursday 12th Sept 2024 commit | commitdiff | tree | snapshot
2024-09-03 Jim ProcterJAL-4386 remove magic string in registerScoreModel... commit | commitdiff | tree | snapshot
2024-09-02 Jim ProcterJAL-4418 fix linkCheck documentation/JAL-4418_2_11_4_0_docs commit | commitdiff | tree | snapshot
2024-09-02 Jim ProcterJAL-4418 release 10th September commit | commitdiff | tree | snapshot
2024-09-02 Jim ProcterMerge branch 'documentation/JAL-4418_2_11_4_0_docs... commit | commitdiff | tree | snapshot
2024-09-02 Jim ProcterMerge branch 'feature/JAL-4446_cancellable_pasimap_etal... commit | commitdiff | tree | snapshot
2024-09-02 Jim ProcterJAL-4418 first pass at updating docs with pasimap,... commit | commitdiff | tree | snapshot
2024-09-02 Ben SoaresJAL-1054 Add option to always follow redirects and... bug/JAL-1054_broken_test commit | commitdiff | tree | snapshot
2024-08-30 Renia CorreyaFix for JAL-4427 commit | commitdiff | tree | snapshot
2024-08-29 Jim ProcterJAL-4446 improved reporting of progress, and transition... feature/JAL-4446_cancellable_pasimap_etal commit | commitdiff | tree | snapshot
2024-08-29 Jim ProcterJAL-4446 refactor progress listener handler code for... commit | commitdiff | tree | snapshot
2024-08-29 Jim ProcterMerge branch 'develop' into feature/JAL-4446_cancellabl... commit | commitdiff | tree | snapshot
2024-08-28 Jim ProcterJAL-4418 tweak release notes for JAL-4328 commit | commitdiff | tree | snapshot
2024-08-28 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-08-28 Ben SoaresJAL-3631 Allow use of ~/ for unixBinDir specified in... feature/JAL-3631_allow_jalview_to_work_from_user-space_directory commit | commitdiff | tree | snapshot
2024-08-28 Ben SoaresJAL-3631 Allow unixBinDir (where a symbolic link gets... commit | commitdiff | tree | snapshot
2024-08-28 Ben SoaresJAL-3631 Configuration tweaks if using the response... commit | commitdiff | tree | snapshot
2024-08-28 Ben SoaresJAL-3631 Adjustments to allow setting the Advanced... commit | commitdiff | tree | snapshot
2024-08-26 Ben SoaresJAL-3631 Fix interpolatove quotation marks in grep... commit | commitdiff | tree | snapshot
2024-08-26 Ben SoaresJAL-3631 Fix interpolative quotation marks in new grep commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterMerge branch 'jims/JAL-4420_review_redo' into develop commit | commitdiff | tree | snapshot
2024-08-26 Ben SoaresJAL-3631 When appdir/jre can't be found, look for the... commit | commitdiff | tree | snapshot
2024-08-26 Ben SoaresJAL-3631 Create an installer.properties file in the... commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterJAL-4418 JAL-4420 is experimental feature jims/JAL-4420_review_redo commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterJAL-4420 new drag'n'drop behaviour is now an 'Experimen... commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterJAL-4420 report exceptions raised during a drop rather... commit | commitdiff | tree | snapshot
2024-08-26 Ben SoaresJAL-4442 Removed debugging variables and a stray 'wait... JAL-4442_cant_quit_jalview_on_windows_11 commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterJAL-4418 release notes for JAL-4398 and rejigged order... commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterMerge branch 'bug/JAL-4398_Window_menu_font_rendering... commit | commitdiff | tree | snapshot
2024-08-26 Jim ProcterMerge branch 'develop' into JAL-4442_cant_quit_jalview_... commit | commitdiff | tree | snapshot
2024-08-23 Jim ProcterMerge branch 'develop' into bug/JAL-4449_ensembl_sequen... commit | commitdiff | tree | snapshot
2024-08-23 Jim ProcterJAL-4449 signed off and also updated Ensembl REST API... commit | commitdiff | tree | snapshot
2024-08-23 Jim ProcterJAL-4418 JAL-3064 JAL-4111 release notes commit | commitdiff | tree | snapshot
2024-08-22 Ben SoaresJAL-4449 Changed HttpUtils.followConnection(conn0)... commit | commitdiff | tree | snapshot
2024-08-22 Jim ProcterJAL-4418 JAL-4450 known issue for 2.11.4 and 2.11.3.3 commit | commitdiff | tree | snapshot
2024-08-22 Jim ProcterJAL-4418 JAL-4100 ncrna genbank as known issue commit | commitdiff | tree | snapshot
2024-08-21 Jim ProcterMerge branch 'develop' into JAL-4442_cant_quit_jalview_... commit | commitdiff | tree | snapshot
2024-08-21 Jim ProcterJAL-4442 reprioritise QuitHandler debug output to eithe... commit | commitdiff | tree | snapshot
2024-08-21 Jim ProcterJAL-4442 reprioritise JvOptionPane debug output to... commit | commitdiff | tree | snapshot
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