source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2006-10-26	amwaterhouse	void changeCase(ActionEvent e	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	set quality to null if removed	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	showConservation, quality, identity not used	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Dont readd the undo	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	check command.string[i] is not null	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Sequence length maybe less than end	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Error message changed	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Sequences may be hidden, not in this aligment	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Invert accelerators	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	sequence may be null if hidden or deleted	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Set alignFrame of gathered panels to be the source...	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	remove gaps size range	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	No need to reduce length if inserting more gaps at...	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Check if hiddenSequence has been deleted	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Known bugs fixed	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Dont scroll off width-1	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	We can delete sequence 0	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Return if negative width, ie alignment deleted	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Check hiddenSequence before placing in tmp	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Get sequence in routine	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	viewport.hasHiddenColumns updated after undo/redo performed	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	EditCommand added to AlignFrame	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Adjusts columnSelection correctly	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Adjusts hiddenColumns correctly	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	more accelerators	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Only send one call per sequence at the moment	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	ShowConservation, quality, identity not used	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Must set alignIndex before delete takes place	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Use EditCommand.Cut	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	HistoryItem replaced by CommandI	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	EditCommand implemented	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	must translate graphics back the same amountcvs diff...	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Change Case is undoable	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	SequenceIndex might be beyond old height	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Must catch image outOfMemoryError	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	changeCase, removeGaps moved to commands package	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	maxIdLength redundant, deleteCols, trimLeft, removeGaps...	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Uses RemoveGapsCommand	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Remove variables not used	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Remove unneccessary import	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Make everything final	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	New accelerators	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Commented out for compilation	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	setOrder is public	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Commands which can be done, or undone	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Its historycvs remove jalview/datamodel/HistoryItem...	commit \| commitdiff \| tree \| snapshot
2006-10-24	jprocter	fixes bug reported by Christopher Tan (help@jalview...	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Wait for response from server before next sequence	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	showqual, showcons never used	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	remove html and body from tooltip	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	new feature args	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Can set description for new features	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Faded anntotations when recalculating	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	set conserve and quality null if outofmemory	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	No longer a FeatureListener	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	parseDescriptionHTML	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	draw text after linkimage	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Remove system.out	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Gerneral XML parse error	commit \| commitdiff \| tree \| snapshot
2006-10-15	jprocter	fixed array out of bounds exception in copy constructor	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	showQuality may be updated during archive file load	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Convenient function findEndRes	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Add features from Popupmenu	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Overview may request index beyond alignment height	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Use i, not index if not representedSeqs	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	If conservation is null, disable Blosum62 and conservat...	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Annotasiont[j] might be null	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Local adjustForhiddenSeqs routine	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	RepresentGroup count items	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Null element checked	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	HiddenSequences now array, not hashtable	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Comment out debug to compile applet	commit \| commitdiff \| tree \| snapshot
2006-10-11	jprocter	fixes exception (array index out of bounds - due to...	commit \| commitdiff \| tree \| snapshot
2006-10-10	jprocter	refined id matching to pick the closest match (by lengt...	commit \| commitdiff \| tree \| snapshot
2006-10-10	jprocter	debug message bugfix on duplicate tree leaf names.	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	No need to find index when deleting	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Calculate alWidth earlier	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Remove growing hashtable	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Check on null consensus	commit \| commitdiff \| tree \| snapshot
2006-10-10	jprocter	bugfix for dodgy trees which contain the same leafname...	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Must repaint whole alignPanel	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	MaxResidue must be at least 2	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Remove unneccessary separator	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Only getGroups once if groupEditingcvs update	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Use AAFrequency final keys	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	SetTooltip empty	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Optimized	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	aaIndex replaces aaHash	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	static final strings for consensus keys	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Consensus and conservation updated in threads	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	fixed log4j complaints for vamsas logging (again)	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	fixed log4j complaints for vamsas logging.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	excluded log4j properties.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	java 1.4 compliant classes.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	imported Vamsas bindings and alpha vamsas client code...	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	set firstColumn property for an alignmentView object.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	fixed getCompactAlignment method to return proper cigar...	commit \| commitdiff \| tree \| snapshot
2006-10-06	jprocter	Added filter so that input to a JPred job is *solely...	commit \| commitdiff \| tree \| snapshot
2006-10-06	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
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