jalview.git
2014-10-21 Jim ProcterJAL-1216 update varna dependency string in jalviewLite...
2014-10-21 Jim ProcterJWS-59 JAL-1216 patch broken InstallAnywhere build
2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
2014-10-21 Jim ProcterJAL-1551 reinstate missing import
2014-10-21 Jim ProcterJAL-674 initial implementation - only need to extract...
2014-10-21 Jim ProcterJAL-1551 crlf
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by...
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation...
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not...
2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines...
2014-10-21 Jim ProcterJAL-674 test for the test for presence of annotation...
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-674 patch for duplicate row bug
2014-10-21 Jim ProcterJAL-674 test for duplicate alignment annotation rows...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-674 patch to ensure existing annotation is properly...
2014-10-21 Jim ProcterJAL-674 test to ensure sequence and annotation on seque...
2014-10-21 Jim ProcterJAL-1551 source formatting
2014-10-21 Jim ProcterJAL-674 JAL-207 getTers for aligned sequences in datase...
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations...
2014-10-21 Jim ProcterJAL-1551 crlf changes
2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL... features/JAL-1264_showHideAnnotations
2014-10-15 Jim ProcterMerge branch 'jims_crlf_hell_JAL-1551' of https://sourc...
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when...
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created...
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static
2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error...
2014-10-15 Jim ProcterJAL-674 patch logic to test whether old and new sequenc...
2014-10-15 Jim ProcterJAL-674 JAL-1305 JAL-348 new liftOver method and test...
2014-10-14 gmungocJAL-1551 CRLF handling
2014-10-13 gmungocJAL-1264 unneeded setup removed
2014-10-13 gmungocJAL-1264 unit test corrected
2014-10-12 gmungocJAL-1544 SEQENCE -> SEQUENCE
2014-10-12 gmungocJAL-1264 help updates for show/hide annotations on
2014-10-10 Jim ProcterJAL-674 employ new signature in Annotate3D service...
2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when...
2014-10-10 Jim ProcterJAL-674 typo
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating...
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure...
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing...
2014-10-10 gmungocJAL-1551 project-specific settings
2014-10-10 gmungocJAL-1551 proposed project settings for code cleanup...
2014-10-10 gmungocJAL-1264 unit tests
2014-10-10 gmungocSuppressed test that needs user interaction to allow...
2014-10-10 gmungocJAL-1551 CRLF handling
2014-10-10 gmungocJAL-1264 show/hide annotations, plus merged changes
2014-10-10 gmungocJAL-1481 wrap tooltip in html
2014-10-10 gmungocJAL-1264 added getAlignmentAnnotations(calcId, label)
2014-10-10 gmungocJAL-1264 reverted (removed added method)
2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into develop
2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into Release_2_8_2_Branch
2014-10-09 Jim Procterpatch fixes JAL-1558
2014-10-08 gmungocMerge branch 'Release_2_8_2_Branch' into
2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into develop
2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into Release_2_8_2_Branch
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about...
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double...
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list
2014-10-07 Jim ProcterJAL-1151 source tidy
2014-10-07 gmungocJAL-1264 wip
2014-10-07 gmungocJAL-1554 handle left-then-right click on sequence id
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into develop
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release...
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into JAL-429_phylip-file...
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into Release_2_8_2_Branch
2014-10-06 Jim ProcterJAL-848 reinstate netbeans files from Phylip patch...
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release...
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into develop
2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into Release_2_8...
2014-10-06 Jim ProcterJAL-1286 missing file for testcase where file ends...
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs...
2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into develop
2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into Release_2_8_2_...
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific...
2014-10-06 Jim ProcterJAL-654 updated pdb db fetcher test to verify the numbe...
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is...
2014-10-06 Jim ProcterJAL-654 format and refactor test demonstrating PDB...
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot...
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch_i18n' into Release_2...
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message...
2014-10-03 gmungocJAL-1264 javadoc update
2014-10-03 gmungocJAL-1264 show/hide annotations; JAL-1481 Find tooltip
2014-10-03 gmungocJAL-1506 delete all warning; JAL-1264 show/hide annotations
2014-10-03 gmungocJAL-1264 refactored show/hide annotation types includin...
2014-10-03 gmungocJAL-1481 search expression validation
2014-10-03 gmungocJAL-1506 correct exit on close align frame
2014-10-03 gmungocJAL-914 don't open help window twice
2014-10-03 gmungocJAL-1264 show/hide annotations, JAL-1481 search validat...
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