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jalview.git
2019-05-06 Ben SoaresJAL-3247 Some getdown image file changes/tidying commit | commitdiff | tree | snapshot
2019-05-03 Ben SoaresJAL-3247 First attempt at getdown code to add macOS... commit | commitdiff | tree | snapshot
2019-05-03 Ben SoaresJAL-3247 Part way towards adding double-click opening... commit | commitdiff | tree | snapshot
2019-05-02 Ben SoaresJAL-3247 Improved file associations on macOS and Windows commit | commitdiff | tree | snapshot
2019-05-02 Ben SoaresJAL-3247 jvp jvl File associations, JRE variablised... commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresFixed -Djvl=true in install4j JVM invocation commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresExtra JVL file association in the installer. Shadowed... commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresMerge branch 'task/JAL-3243_PDB_free_text_error' into... commit | commitdiff | tree | snapshot
2019-04-30 Ben SoaresJAL-3243 Replaced javax.ws jar compatible with jersey... task/JAL-3243_PDB_free_text_error commit | commitdiff | tree | snapshot
2019-04-30 Ben SoaresJAL-3196 Correcting the source for getdown (already... commit | commitdiff | tree | snapshot
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil... commit | commitdiff | tree | snapshot
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... commit | commitdiff | tree | snapshot
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterJAL-3236 see also previous commit - tweak the install4j... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresAdded a unixInstaller and unixArchive media-type to... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresRemoving old commented out 'org.gradle.java.home='... commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2743 class Javadoc commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresAlso removing eclipse .project and .settings from the... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresRemoving .classpath from this branch commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterJAL-3150 examples/exampleFile.jvp for updated manual... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition" commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition' commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 tidy up stdout on build commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 allow gradle builds to run without having... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'task/JAL-3234_211_codesigning' into develop commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Fixed help image mangling, moved... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 enable codesigning and executable-post-process... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 Gradle properties for signing: OSX_KEYSTORE... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 To be compatible with install4j bundl... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 Tidied up Network installers in install4j... commit | commitdiff | tree | snapshot
2019-04-24 Ben SoaresJAL-3224 minor fix for build.gradle and gradle eclipse commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterJAL-1929 JAL-3224 java 8 and java 11 specific getdown... commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterJAL-1929 JAL-3224 JRE getdown URLs must be relative... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 add JAVA_VERSION to shadowJar classifier so... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 make sure only libDistDir/*.jar are added... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown channel structure is {build... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 specify file object in projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 JAL-3224 patch URL paths to point to jalview... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 provide absolute module path as J11 compile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterMerge branch 'jims/JAL-3130_Java11_Gradle_publishing... commit | commitdiff | tree | snapshot
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-1793 basic help text for VCF option commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 additional release notes commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 release notes first pass complete commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not... commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-2620 updated help page to mention alternative genet... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL" commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 fix 2.11 html anchor in docs commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 Jalview 2.11 what’s New and estimated release... commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterJAL-3111 tweak PCA documentation commit | commitdiff | tree | snapshot
2019-04-17 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele... commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Add commons-compress-1.18.jar commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 Bundling appropriate Mac OS/Windows JRE as... commit | commitdiff | tree | snapshot
2019-04-17 Ben SoaresJAL-3224 New version of getdown which will cope with... commit | commitdiff | tree | snapshot
2019-04-16 Ben SoaresJAL-3130 moved resources/install4j to utils/install4j commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 tidy up system.output jims/JAL-3130_Java11_Gradle_publishing commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 call Jalview via the Test JVM’s JAVA_HOME... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 refactored ‘clover’ to ‘use_clover’ since... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 reportCurrentWorkingDirectory test... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3196 change default are resource properties to... commit | commitdiff | tree | snapshot
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Somewhere in the old libs the Jws2 client... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle... commit | commitdiff | tree | snapshot
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt... commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 write clover.xml during cloverReport phase commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 make sure testng-results.xml is generated commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 instrument main and compile separately to... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 gradle test now runs open clover 4.3.1 and... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 ensure J11 libs/modules are added when buildin... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 clean up eclipse class path for dependencies... commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3018 REST version updated to 10.0 commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 adapted getdown src commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG... commit | commitdiff | tree | snapshot
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