git://source.jalview.org
/
jalview.git
/ shortlog
commit
grep
author
committer
pickaxe
?
search:
re
summary
| shortlog |
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
jalview.git
2024-10-04
Jim Procter
JAL-4473 whatsNew 2.11.4.1
patch/fix_JAL-4470_JAL-4471_for_2_11_4_1
commit
|
commitdiff
|
tree
|
snapshot
2024-10-04
Jim Procter
JAL-4473 new jalview patch release
commit
|
commitdiff
|
tree
|
snapshot
2024-10-04
Jim Procter
fix for JAL-4471 - secondary structure similarity tree...
commit
|
commitdiff
|
tree
|
snapshot
2024-10-04
Jim Procter
JAL-4470 fix: check for workers!=null before checking...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-18
Jim Procter
JAL-4418 release notes typos
commit
|
commitdiff
|
tree
|
snapshot
2024-09-18
Jim Procter
JAL-4418 bump release date to 18th September 2024
commit
|
commitdiff
|
tree
|
snapshot
2024-09-18
Jim Procter
JAL-4418 fix up help TOC copypaste error
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 more documentation tweaks - getting Jen Flemin...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 JAL-4428 CHANNEL=RELEASE has a different path...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 fix link case for linkcheck and window menu...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4159 pasimap viewer image for docs
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 JAL-4090 known defect report for JAL-4349
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4414 JAL-1054 fix irrelevant failing network test...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
Merge branch 'bug/JAL-1054_broken_test' into develop
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 documentation for 4461
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 documentation for ss annotation row preference...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 JAL-4442 quit racecondition patch
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
Merge branch 'JAL-4442_cant_quit_jalview_on_windows_11...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 release 2.11.4.0 today!
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
JAL-4418 JAL-4392 show/hide group associated secondary...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-17
Jim Procter
Merge branch 'improvement/JAL-4461_select_format_from_e...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Jim Procter
JAL-4392 JAL-4425 commented out code to allow consensus...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Jim Procter
Merge branch 'patch/JAL-4392_hide_ssconsensus_if_no_dat...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Jim Procter
Merge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Jim Procter
JAL-4392 autohide the secondary structure consensus...
patch/JAL-4392_hide_ssconsensus_if_no_data
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Renia Correya
JAL-4427 Added test cases and a minor correction
bug/JAL-4427_HTML_code_in_sequence_ID_text
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Jim Procter
JAL-4392 don't show SS consensus for DNA alignments
commit
|
commitdiff
|
tree
|
snapshot
2024-09-16
Ben Soares
JAL-4461 Move SwingUtils to darrylbu.util.SwingUtils...
improvement/JAL-4461_select_format_from_extension
commit
|
commitdiff
|
tree
|
snapshot
2024-09-13
Jim Procter
JAL-4418 release notes for JAL-4461 - nb need to docume...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-13
Jim Procter
Merge branch 'improvement/JAL-4461_select_format_from_e...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-13
Ben Soares
JAL-4461 Tests for JalviewFileChooser.defaultSaveFileFo...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-13
Ben Soares
JAL-4461 Adding in a number of properties that control...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-13
Jim Procter
JAL-4418 sign off JAL-4454 and convert markdown header...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-13
Ben Soares
JAL-4461 Change JalviewFileFilter to use LinkedHashSet...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Jim Procter
Merge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Jim Procter
JAL-4418 sign off JAL-4427 JAL-4451 fix
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Jim Procter
Merge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Ben Soares
JAL-4461 Added a dynamic tooltip to give more informati...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Jim Procter
JAL-4461 fix up formatting and remove old comment
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Jim Procter
JAL-4461 after autodetection, update the filechooser...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Ben Soares
JAL-4461 Change labelling of All-known-alignment-files...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Ben Soares
JAL-4460 Don't display the All-known-alignment-files...
bug/JAL-4460_alignment_save_as_format_not_registering
commit
|
commitdiff
|
tree
|
snapshot
2024-09-12
Jim Procter
JAL-4454 make sure 2.11.4.0-test is stripped - *for...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4418 release notes for JAL-4460
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
Merge branch 'bug/JAL-4460_alignment_save_as_format_not...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4454 make sure 2.11.4.0-test is stripped
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Ben Soares
JAL-4460 In save as, set format from file extension...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Ben Soares
JAL-4460 Don't add .aln for an 'All known formats....
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Ben Soares
JAL-4460 Update currentFileFormat /after/ new format...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4418 JAL-4428,JAL-4421,JAL-3393 release notes
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
Merge branch 'patch/JAL-4428_osx_codesigning_scripts...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4428 codesign jnilibs
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4428 informational output (possibly needs verbosity...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4428 giving another XXX
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Jim Procter
JAL-4428 add some XXXX for mktemp -t
commit
|
commitdiff
|
tree
|
snapshot
2024-09-11
Ben Soares
JAL-4428 Fixes to -z's and mktemp
commit
|
commitdiff
|
tree
|
snapshot
2024-09-10
Jim Procter
Merge branch 'patch/JAL-4428_osx_codesigning_scripts...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-10
Jim Procter
JAL-4454 allow channels to pick up most recent 'whatsNe...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-09
Jim Procter
JAL-4418 initial pasimap documentation and updated...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-09
Jim Procter
JAL-4418 postpone release to Thursday 12th Sept 2024
commit
|
commitdiff
|
tree
|
snapshot
2024-09-03
Jim Procter
JAL-4386 remove magic string in registerScoreModel...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-02
Jim Procter
JAL-4418 fix linkCheck
documentation/JAL-4418_2_11_4_0_docs
commit
|
commitdiff
|
tree
|
snapshot
2024-09-02
Jim Procter
JAL-4418 release 10th September
commit
|
commitdiff
|
tree
|
snapshot
2024-09-02
Jim Procter
Merge branch 'documentation/JAL-4418_2_11_4_0_docs...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-02
Jim Procter
Merge branch 'feature/JAL-4446_cancellable_pasimap_etal...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-02
Jim Procter
JAL-4418 first pass at updating docs with pasimap,...
commit
|
commitdiff
|
tree
|
snapshot
2024-09-02
Ben Soares
JAL-1054 Add option to always follow redirects and...
bug/JAL-1054_broken_test
commit
|
commitdiff
|
tree
|
snapshot
2024-08-30
Renia Correya
Fix for JAL-4427
commit
|
commitdiff
|
tree
|
snapshot
2024-08-29
Jim Procter
JAL-4446 improved reporting of progress, and transition...
feature/JAL-4446_cancellable_pasimap_etal
commit
|
commitdiff
|
tree
|
snapshot
2024-08-29
Jim Procter
JAL-4446 refactor progress listener handler code for...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-29
Jim Procter
Merge branch 'develop' into feature/JAL-4446_cancellabl...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-28
Jim Procter
JAL-4418 tweak release notes for JAL-4328
commit
|
commitdiff
|
tree
|
snapshot
2024-08-28
Jim Procter
Merge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-28
Ben Soares
JAL-3631 Allow use of ~/ for unixBinDir specified in...
feature/JAL-3631_allow_jalview_to_work_from_user-space_directory
commit
|
commitdiff
|
tree
|
snapshot
2024-08-28
Ben Soares
JAL-3631 Allow unixBinDir (where a symbolic link gets...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-28
Ben Soares
JAL-3631 Configuration tweaks if using the response...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-28
Ben Soares
JAL-3631 Adjustments to allow setting the Advanced...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Ben Soares
JAL-3631 Fix interpolatove quotation marks in grep...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Ben Soares
JAL-3631 Fix interpolative quotation marks in new grep
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
Merge branch 'jims/JAL-4420_review_redo' into develop
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Ben Soares
JAL-3631 When appdir/jre can't be found, look for the...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Ben Soares
JAL-3631 Create an installer.properties file in the...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
JAL-4418 JAL-4420 is experimental feature
jims/JAL-4420_review_redo
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
JAL-4420 new drag'n'drop behaviour is now an 'Experimen...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
JAL-4420 report exceptions raised during a drop rather...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Ben Soares
JAL-4442 Removed debugging variables and a stray 'wait...
JAL-4442_cant_quit_jalview_on_windows_11
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
JAL-4418 release notes for JAL-4398 and rejigged order...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
Merge branch 'bug/JAL-4398_Window_menu_font_rendering...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-26
Jim Procter
Merge branch 'develop' into JAL-4442_cant_quit_jalview_...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-4449_ensembl_sequen...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-23
Jim Procter
JAL-4449 signed off and also updated Ensembl REST API...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-23
Jim Procter
JAL-4418 JAL-3064 JAL-4111 release notes
commit
|
commitdiff
|
tree
|
snapshot
2024-08-22
Ben Soares
JAL-4449 Changed HttpUtils.followConnection(conn0)...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-22
Jim Procter
JAL-4418 JAL-4450 known issue for 2.11.4 and 2.11.3.3
commit
|
commitdiff
|
tree
|
snapshot
2024-08-22
Jim Procter
JAL-4418 JAL-4100 ncrna genbank as known issue
commit
|
commitdiff
|
tree
|
snapshot
2024-08-21
Jim Procter
Merge branch 'develop' into JAL-4442_cant_quit_jalview_...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-21
Jim Procter
JAL-4442 reprioritise QuitHandler debug output to eithe...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-21
Jim Procter
JAL-4442 reprioritise JvOptionPane debug output to...
commit
|
commitdiff
|
tree
|
snapshot
2024-08-19
Ben Soares
JAL-4428 README.md file for sign_and_stapled_dmg.sh
commit
|
commitdiff
|
tree
|
snapshot
2024-08-19
Jim Procter
JAL-789 limit applicable score models to substitution...
commit
|
commitdiff
|
tree
|
snapshot
next