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jalview.git
2023-05-30 Ben SoaresJAL-4121 slight refactoring of method name and added... commit | commitdiff | tree | snapshot
2023-05-27 Ben SoaresJAL-4121 Added a NPE check caught in tests. Added ... commit | commitdiff | tree | snapshot
2023-05-27 Ben SoaresJAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt... commit | commitdiff | tree | snapshot
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added... commit | commitdiff | tree | snapshot
2023-05-26 Ben SoaresJAL-629 dispose of non-displaying StructureChooser... commit | commitdiff | tree | snapshot
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3416 JAL-3820 FlatLaf default for everyone, includi... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3416 better path name commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3820 JAL-3830 improvements to script launching... commit | commitdiff | tree | snapshot
2023-05-25 James ProcterMerge branch 'bug/JAL-4186_space_in_sequence_name_cause... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-3416 remove old flatlaf jars from j8lib commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-4186 fixed a test commit | commitdiff | tree | snapshot
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... commit | commitdiff | tree | snapshot
2023-05-24 Ben SoaresJAL-4186 attempts to work in jalviewjs, still not working commit | commitdiff | tree | snapshot
2023-05-24 Ben SoaresJAL-4186 fix dialog. broken in JalviewJS commit | commitdiff | tree | snapshot
2023-05-24 Ben SoaresJAL-3416 slightly improved colours for tabber pane... commit | commitdiff | tree | snapshot
2023-05-24 Ben SoaresJAL-3416 Updated flatlaf libraries. Native libraries... commit | commitdiff | tree | snapshot
2023-05-23 Ben SoaresJAL-629 Updated help docs and fixed structure image... commit | commitdiff | tree | snapshot
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... commit | commitdiff | tree | snapshot
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args. commit | commitdiff | tree | snapshot
2023-05-21 Ben SoaresJAL-629 Clarify sections of arguments with --help-all... commit | commitdiff | tree | snapshot
2023-05-20 Ben SoaresJAL-4187 JAL-629 JAL-3830 small adjustments after furth... commit | commitdiff | tree | snapshot
2023-05-20 Ben SoaresJAL-3416 Ensure setFrameIcon(null) is set for remaining... commit | commitdiff | tree | snapshot
2023-05-20 Ben SoaresJAL-3416 Removed another internal Frame icon from title bar commit | commitdiff | tree | snapshot
2023-05-20 Ben SoaresJAL-4187 JAL-629 JAL-3830 adjustments to Cygwin and... commit | commitdiff | tree | snapshot
2023-05-20 Ben SoaresJAL-4160 JAL-3830 Improve jalview.bin.Launcher for... commit | commitdiff | tree | snapshot
2023-05-20 Ben SoaresJAL-4160 JAL-3830 Improve jalview.bin.Launcher for... commit | commitdiff | tree | snapshot
2023-05-19 Ben SoaresJAL-4187 JAL-629 JAL-3830 Fix ArgParser to check for... commit | commitdiff | tree | snapshot
2023-05-19 Ben SoaresJAL-629 Fix missing icon for command line launch commit | commitdiff | tree | snapshot
2023-05-19 Ben SoaresJAL-629 Updated debian helpers for new command line commit | commitdiff | tree | snapshot
2023-05-19 Ben SoaresJAL-629 Updated launching scripts to 1) not insert... commit | commitdiff | tree | snapshot
2023-05-19 Ben SoaresJAL-629 Added Arg.Types and additional --help-type... commit | commitdiff | tree | snapshot
2023-05-18 Ben SoaresJAL-629 fixes to typed args commit | commitdiff | tree | snapshot
2023-05-18 Ben SoaresJAL-629 Added 'Type' to args and argvalues commit | commitdiff | tree | snapshot
2023-05-18 Ben SoaresJAL-629 fixes to help docs commit | commitdiff | tree | snapshot
2023-05-17 Ben SoaresJAL-629 Tidy up tests and replaced methods before merge... commit | commitdiff | tree | snapshot
2023-05-17 Ben SoaresJAL-629 Changed some old -arg to --arg in help docs... commit | commitdiff | tree | snapshot
2023-05-17 Ben SoaresJAL-629 tidying the help docs commit | commitdiff | tree | snapshot
2023-05-17 Ben SoaresJAL-629 delete stray files commit | commitdiff | tree | snapshot
2023-05-17 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... commit | commitdiff | tree | snapshot
2023-05-17 James ProcterJAL-4184 release notes commit | commitdiff | tree | snapshot
2023-05-17 James ProcterMerge branch 'patch/JAL-4184_description_stockholm... commit | commitdiff | tree | snapshot
2023-05-17 James ProcterJAL-4184 export description line in stockholm patch/JAL-4184_description_stockholm commit | commitdiff | tree | snapshot
2023-05-17 James ProcterJAL-4184 failing test for description export and re... commit | commitdiff | tree | snapshot
2023-05-16 Ben SoaresJAL-629 Finished documentation for new command lines. commit | commitdiff | tree | snapshot
2023-05-16 Ben SoaresJAL-629 Ensure precedence of named linked ID values... commit | commitdiff | tree | snapshot
2023-05-15 Ben SoaresJAL-629 More help text commit | commitdiff | tree | snapshot
2023-05-15 Ben SoaresRevert "JAL-629 Add a --threads argument to allow a... commit | commitdiff | tree | snapshot
2023-05-15 Ben SoaresJAL-629 Add a --threads argument to allow a limited... commit | commitdiff | tree | snapshot
2023-05-14 Ben SoaresJAL-629 add an {extension} substitution commit | commitdiff | tree | snapshot
2023-05-13 Ben SoaresJAL-629 launcher shell script uses jalview.bin.Launcher... commit | commitdiff | tree | snapshot
2023-05-12 Ben SoaresJAL-629 More docs commit | commitdiff | tree | snapshot
2023-05-12 Ben SoaresJAL-629 extra test for --output open*.ext when used... commit | commitdiff | tree | snapshot
2023-05-12 Ben SoaresJAL-629 Added --opened arg which is like limiting ... commit | commitdiff | tree | snapshot
2023-05-11 Ben SoaresJAL-629 Add some shortnames to args. Add Opt.OUTPUT... commit | commitdiff | tree | snapshot
2023-05-11 Ben SoaresJAL-629 Move clarguments documentation to default.... commit | commitdiff | tree | snapshot
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac... commit | commitdiff | tree | snapshot
2023-05-11 Ben SoaresJAL-629 Added linkedId to ArgValuesMap for reference... commit | commitdiff | tree | snapshot
2023-05-10 Ben SoaresJAL-629 Check Arg options for obtaining boolean or... commit | commitdiff | tree | snapshot
2023-05-10 Ben SoaresJAL-629 Catch a NPE, fix a test commit | commitdiff | tree | snapshot
2023-05-10 Ben SoaresJAL-629 More docs. Usage statement. Adjust some logging... commit | commitdiff | tree | snapshot
2023-05-09 Ben SoaresJAL-629 Add --seqid for non-subval use, make arg value... commit | commitdiff | tree | snapshot
2023-05-09 Ben SoaresJAL-629 update a subval for structureviewer in the... commit | commitdiff | tree | snapshot
2023-05-09 Ben SoaresJAL-629 more docs commit | commitdiff | tree | snapshot
2023-05-09 Ben SoaresJAL-629 change --renderer to --textrenderer to be more... commit | commitdiff | tree | snapshot
2023-05-05 Ben SoaresJAL-629 test fixes commit | commitdiff | tree | snapshot
2023-05-04 Ben SoaresJAL-629 Moved additional CommandLineOperationsNG tests... commit | commitdiff | tree | snapshot
2023-05-04 Ben SoaresJAL-629 More NG arguments: --features, --annotations... commit | commitdiff | tree | snapshot
2023-05-03 Ben SoaresJAL-629 a bit more documentation commit | commitdiff | tree | snapshot
2023-05-03 Ben SoaresJAL-629 added eps and imagemap. Added --output and... commit | commitdiff | tree | snapshot
2023-05-02 Ben SoaresJAL-629 Changed --newframe and --allframes to --new... commit | commitdiff | tree | snapshot
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output... commit | commitdiff | tree | snapshot
2023-05-01 Ben SoaresJAL-629 fix lang label names after adjusting colour... commit | commitdiff | tree | snapshot
2023-05-01 Ben SoaresJAL-629 real life test for --allframes commit | commitdiff | tree | snapshot
2023-04-30 Ben SoaresJAL-629 Change behaviour of --open GLOB to increment... commit | commitdiff | tree | snapshot
2023-04-29 Ben SoaresJAL-629 Only log to console FAILED tests commit | commitdiff | tree | snapshot
2023-04-29 Ben SoaresJAL-629 Added --all arg, [*] linkedId and functionality... commit | commitdiff | tree | snapshot
2023-04-28 Ben SoaresJAL-629 Fixed the argfile1 after subval separator change commit | commitdiff | tree | snapshot
2023-04-28 Ben SoaresJAL-629 Fixed the argfiletests after subval separator... commit | commitdiff | tree | snapshot
2023-04-28 Ben SoaresJAL-629 Fixed the argfile after subval separator change commit | commitdiff | tree | snapshot
2023-04-28 Ben SoaresJAL-629 Change colour scheme shortnames to something... commit | commitdiff | tree | snapshot
2023-04-28 Ben SoaresJAL-4167 Now we don't fail testTasks on No Matching... commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-629 Part-way to honouring --tests argument commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-629 start of help text commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-629 changed args in tests commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-629 Fixed appending URLs commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-629 Changed --increment to --newframe to make sense... commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-629 allow opening URL as only argument(s) commit | commitdiff | tree | snapshot
2023-04-27 Ben SoaresJAL-4167 Added OVERALL summary to bash output commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-4167 Added colours to bash output commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-4167 Allow a test to run in multiple testTasks commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-629 shorter wait times for this test commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-4167 Adjustments to get clover to work with normal... commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-4167 Adjustments to get clover to work with normal... commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-4167 Adjustments to get clover to work commit | commitdiff | tree | snapshot
2023-04-26 Ben SoaresJAL-629 JAL-4167 Added args to tests. Fixed potential... commit | commitdiff | tree | snapshot
2023-04-24 Ben SoaresJAL-629 Add --nowebdiscovery. Distinguish arg=="open... commit | commitdiff | tree | snapshot
2023-04-24 Ben SoaresJAL-629 Put commandsTest.jvprops in the right place commit | commitdiff | tree | snapshot
2023-04-24 Ben SoaresJAL-629 loaded props from arg in failing build server... commit | commitdiff | tree | snapshot
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