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jalview.git
2024-09-11
Jim Procter
Merge branch 'bug/JAL-4460_alignment_save_as_format_not...
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2024-09-11
Jim Procter
JAL-4454 make sure 2.11.4.0-test is stripped
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2024-09-11
Ben Soares
JAL-4460 In save as, set format from file extension...
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2024-09-11
Ben Soares
JAL-4460 Don't add .aln for an 'All known formats....
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2024-09-11
Ben Soares
JAL-4460 Update currentFileFormat /after/ new format...
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2024-09-11
Jim Procter
JAL-4418 JAL-4428,JAL-4421,JAL-3393 release notes
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2024-09-11
Jim Procter
Merge branch 'patch/JAL-4428_osx_codesigning_scripts...
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2024-09-11
Jim Procter
JAL-4428 codesign jnilibs
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2024-09-11
Jim Procter
JAL-4428 informational output (possibly needs verbosity...
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2024-09-11
Jim Procter
JAL-4428 giving another XXX
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2024-09-11
Jim Procter
JAL-4428 add some XXXX for mktemp -t
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2024-09-11
Ben Soares
JAL-4428 Fixes to -z's and mktemp
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2024-09-10
Jim Procter
Merge branch 'patch/JAL-4428_osx_codesigning_scripts...
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2024-09-10
Jim Procter
JAL-4454 allow channels to pick up most recent 'whatsNe...
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2024-09-09
Jim Procter
JAL-4418 initial pasimap documentation and updated...
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2024-09-09
Jim Procter
JAL-4418 postpone release to Thursday 12th Sept 2024
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2024-09-03
Jim Procter
JAL-4386 remove magic string in registerScoreModel...
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2024-09-02
Jim Procter
JAL-4418 fix linkCheck
documentation/JAL-4418_2_11_4_0_docs
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2024-09-02
Jim Procter
JAL-4418 release 10th September
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2024-09-02
Jim Procter
Merge branch 'documentation/JAL-4418_2_11_4_0_docs...
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2024-09-02
Jim Procter
Merge branch 'feature/JAL-4446_cancellable_pasimap_etal...
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2024-09-02
Jim Procter
JAL-4418 first pass at updating docs with pasimap,...
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2024-08-29
Jim Procter
JAL-4446 improved reporting of progress, and transition...
feature/JAL-4446_cancellable_pasimap_etal
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2024-08-29
Jim Procter
JAL-4446 refactor progress listener handler code for...
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2024-08-29
Jim Procter
Merge branch 'develop' into feature/JAL-4446_cancellabl...
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2024-08-28
Jim Procter
JAL-4418 tweak release notes for JAL-4328
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2024-08-28
Jim Procter
Merge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
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2024-08-28
Ben Soares
JAL-3631 Allow use of ~/ for unixBinDir specified in...
feature/JAL-3631_allow_jalview_to_work_from_user-space_directory
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2024-08-28
Ben Soares
JAL-3631 Allow unixBinDir (where a symbolic link gets...
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2024-08-28
Ben Soares
JAL-3631 Configuration tweaks if using the response...
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2024-08-28
Ben Soares
JAL-3631 Adjustments to allow setting the Advanced...
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2024-08-26
Ben Soares
JAL-3631 Fix interpolatove quotation marks in grep...
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2024-08-26
Ben Soares
JAL-3631 Fix interpolative quotation marks in new grep
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2024-08-26
Jim Procter
Merge branch 'jims/JAL-4420_review_redo' into develop
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2024-08-26
Ben Soares
JAL-3631 When appdir/jre can't be found, look for the...
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2024-08-26
Ben Soares
JAL-3631 Create an installer.properties file in the...
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2024-08-26
Jim Procter
JAL-4418 JAL-4420 is experimental feature
jims/JAL-4420_review_redo
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2024-08-26
Jim Procter
JAL-4420 new drag'n'drop behaviour is now an 'Experimen...
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2024-08-26
Jim Procter
JAL-4420 report exceptions raised during a drop rather...
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2024-08-26
Jim Procter
JAL-4418 release notes for JAL-4398 and rejigged order...
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2024-08-26
Jim Procter
Merge branch 'bug/JAL-4398_Window_menu_font_rendering...
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2024-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-4449_ensembl_sequen...
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2024-08-23
Jim Procter
JAL-4449 signed off and also updated Ensembl REST API...
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2024-08-23
Jim Procter
JAL-4418 JAL-3064 JAL-4111 release notes
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2024-08-22
Ben Soares
JAL-4449 Changed HttpUtils.followConnection(conn0)...
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2024-08-22
Jim Procter
JAL-4418 JAL-4450 known issue for 2.11.4 and 2.11.3.3
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2024-08-22
Jim Procter
JAL-4418 JAL-4100 ncrna genbank as known issue
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2024-08-19
Ben Soares
JAL-4428 README.md file for sign_and_stapled_dmg.sh
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2024-08-19
Jim Procter
JAL-789 limit applicable score models to substitution...
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2024-08-19
Ben Soares
JAL-3631 Change macos-install-jalview.sh to use ditto...
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2024-08-19
Jim Procter
JAL-4446 allow progress bar to become indeterminate...
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2024-08-19
Jim Procter
Merge branch 'develop' into feature/JAL-4446_cancellabl...
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2024-08-19
Ben Soares
JAL-4428 localise function vars. Add -q -q option....
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2024-08-18
Ben Soares
JAL-4428 More coherent command line options and better...
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2024-08-17
Ben Soares
JAL-4428 Added in stapling into (now) sign_and_staple_d...
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2024-08-16
Ben Soares
JAL-4428 sign_dmg.sh with bells on
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2024-08-16
Ben Soares
JAL-3631 Fix EnvConfig.getUserAppdir() in getdown when...
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2024-08-15
Ben Soares
JAL-3631 Create a jalview_x_update link in appdir/bin...
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2024-08-15
Ben Soares
Merge branch 'develop' into feature/JAL-3631_allow_jalv...
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2024-08-13
Ben Soares
JAL-4111 Remove unnecessary dependency on gradle-imagem...
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2024-08-12
Ben Soares
Merge branch 'develop' into feature/JAL-3631_allow_jalv...
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2024-08-08
Ben Soares
JAL-3631 Better messaging and a root check on updating...
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2024-08-08
Ben Soares
JAL-3631 Change name of update link in DMGs. Correct...
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2024-08-07
Jim Procter
Merge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
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2024-08-07
Jim Procter
JAL-4447 standardised title formula for reporting score...
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2024-08-07
Jim Procter
JAL-4446 reuse lasteta value
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2024-08-07
Jim Procter
JAL-4159 JAL-789 report pasimap and pairwise alignment...
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2024-08-07
Jim Procter
JAL-4159 suppress pairwise alignment display options...
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2024-08-07
Jim Procter
JAL-4446 better reporting of ETA estimation - particula...
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2024-08-06
Ben Soares
JAL-3631 Made bespoke command line arguments for consol...
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2024-08-06
Ben Soares
JAL-3631 Added install4j installer command line options...
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2024-08-06
Ben Soares
JAL-3631 Important change to Execution Level in Windows...
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2024-08-06
Ben Soares
JAL-3631 Short sleep added to 100% progress on installe...
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2024-08-06
Ben Soares
JAL-3631 An attempt to add a Reset to defaults button...
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2024-08-06
Jim Procter
JAL-4446 avoid NPE when progress bar message is null
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2024-08-06
Ben Soares
JAL-3631 Some small but important changes to run_other_...
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2024-08-05
Ben Soares
JAL-3631 JAL-4444 Change way we add the jalview_x and...
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2024-08-05
Ben Soares
JAL-3631 Icons for installer wizard title bar
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2024-08-05
Ben Soares
JAL-3631 update.ps1 has fixed Readlink-f function,...
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2024-08-05
Ben Soares
JAL-3631 Revert the Jalview installer icon back to...
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2024-08-05
Jim Procter
JAL-1551 source formatting and header
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2024-08-05
Jim Procter
JAL-4446 .. missing methods for cancellable pasimap
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2024-08-05
Jim Procter
JAL-4446 cancellable Pasimap - still need to make the...
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2024-08-05
Jim Procter
JAL-4446 calculate and report PaSiMap ETA in progress bar
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2024-08-05
Jim Procter
JAL-4446 allow progress bar message to be changed whils...
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2024-08-05
Jim Procter
JAL-1551 apply GPLv3 for source files
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2024-08-05
Jim Procter
JAL-1551 gradle spotlessApply and doc tweaks
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2024-08-05
Ben Soares
JAL-3631 Adjustment to wizard size (was too big in...
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2024-08-05
Jim Procter
Merge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
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2024-08-02
Ben Soares
JAL-3631 made Readlink-f work in powershell. Need...
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2024-08-02
Jim Procter
JAL-4418 release note for JAL-3063 doc/jalview-projects.md
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2024-08-02
Jim Procter
Merge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
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2024-08-02
Ben Soares
JAL-3631 update.sh script fixed to work in Windows...
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2024-08-01
Ben Soares
JAL-3631 Administrator mode label on all screens of...
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2024-08-01
Ben Soares
JAL-3631 Added a test for a specified update and a...
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2024-08-01
Ben Soares
Merge branch 'develop' into feature/JAL-3631_allow_jalv...
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2024-08-01
Ben Soares
JAL-3631 Small change to update.sh. update.ps1 NOT...
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2024-08-01
Ben Soares
JAL-3631 Remove a debug echo
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2024-08-01
Jim Procter
JAL-4445 - increase the fileglob expected counts
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2024-08-01
Ben Soares
JAL-3631 Convert both CLASSPATHS in update.sh
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