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jalview.git
2021-02-03 Jim ProcterJAL-3808 handle 1:1 mappings in exonerate gff2 using... commit | commitdiff | tree | snapshot
2021-02-03 Jim ProcterJAL-3808 example exonerate cdna2genome and coding2genom... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3796_notarization_no_uninstaller... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalvie... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization_... commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files... commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Smaller DMG Finder windows for all DS_Store... task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 New DS_Store for smaller DMG Finder window commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Remove Uninstall Old Jalview.app in Release_2_... commit | commitdiff | tree | snapshot
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... commit | commitdiff | tree | snapshot
2021-01-14 Jalview Development... JAL-3796 update to Install4j 8.0.10 and add config... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3783 Reverting to using groovy-all-2.4.12-indy... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3628 Test for doubly saved single backup file scheme commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Defintely want SplashScreen to appear in the... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Changed building.md to describe -PCHANNEL... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Changed building.md to reflect change of name... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresJAL-3594 Better Jalview Develop banner commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresJAL-3594 Documentation added to building.md for using... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 Improved About banners for develop and test... commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 Images for splash screen commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresJAL-3594 Change main window title commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresJAL-3594 DMG fixes commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3754 Fixed jar task creating strange dir because... commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3754 Fixed jar task creating strange dir because... commit | commitdiff | tree | snapshot
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3754 fixed a problem with jar task creating a stray... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3775 added the Platform.isLinux() check for test... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Generating GIMP XCF files for getdown and... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Release images and channel properties commit | commitdiff | tree | snapshot
2020-12-03 Ben SoaresJAL-3594 New way for build.gradle to override propertie... commit | commitdiff | tree | snapshot
2020-12-02 Ben SoaresJAL-3594 new logos, icons and cosmetics for getdown... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3594 Different icon/getdown styling when launching... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresMerge branch 'develop' into merge/develop_and_rebase_sq... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Updated getdown with re-factored... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3775 Adding Mockito jars for tests. Needed for... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line... commit | commitdiff | tree | snapshot
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using... commit | commitdiff | tree | snapshot
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3775 Re-compiled Getdown jars commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Help documentation updated commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 pass getdown proxy settings in proxy.txt on... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3676 More explicit tooltip about resetting log... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3676 improvement for visual selection of console... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3676 code review -- added non-listed Level into... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to... commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 Even more Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-11-10 Ben SoaresJAL-3628 More Cache.log.debug statements commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used. commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI.... commit | commitdiff | tree | snapshot
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 removed debugging prints commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat... commit | commitdiff | tree | snapshot
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly... commit | commitdiff | tree | snapshot
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7 commit | commitdiff | tree | snapshot
2020-10-29 Ben SoaresJAL-3248 Added mention of version 'TEST' in shadow... commit | commitdiff | tree | snapshot
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corre... commit | commitdiff | tree | snapshot
2020-10-28 Jim ProcterJAL-3760 fix tests for changed behaviour commit | commitdiff | tree | snapshot
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