source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2006-10-15	jprocter	fixed array out of bounds exception in copy constructor	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	showQuality may be updated during archive file load	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Convenient function findEndRes	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Add features from Popupmenu	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Overview may request index beyond alignment height	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Use i, not index if not representedSeqs	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	If conservation is null, disable Blosum62 and conservat...	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Annotasiont[j] might be null	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Local adjustForhiddenSeqs routine	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	RepresentGroup count items	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Null element checked	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	HiddenSequences now array, not hashtable	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Comment out debug to compile applet	commit \| commitdiff \| tree \| snapshot
2006-10-11	jprocter	fixes exception (array index out of bounds - due to...	commit \| commitdiff \| tree \| snapshot
2006-10-10	jprocter	refined id matching to pick the closest match (by lengt...	commit \| commitdiff \| tree \| snapshot
2006-10-10	jprocter	debug message bugfix on duplicate tree leaf names.	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	No need to find index when deleting	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Calculate alWidth earlier	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Remove growing hashtable	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Check on null consensus	commit \| commitdiff \| tree \| snapshot
2006-10-10	jprocter	bugfix for dodgy trees which contain the same leafname...	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Must repaint whole alignPanel	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	MaxResidue must be at least 2	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Remove unneccessary separator	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Only getGroups once if groupEditingcvs update	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Use AAFrequency final keys	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	SetTooltip empty	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Optimized	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	aaIndex replaces aaHash	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	static final strings for consensus keys	commit \| commitdiff \| tree \| snapshot
2006-10-10	amwaterhouse	Consensus and conservation updated in threads	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	fixed log4j complaints for vamsas logging (again)	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	fixed log4j complaints for vamsas logging.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	excluded log4j properties.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	java 1.4 compliant classes.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	imported Vamsas bindings and alpha vamsas client code...	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	set firstColumn property for an alignmentView object.	commit \| commitdiff \| tree \| snapshot
2006-10-09	jprocter	fixed getCompactAlignment method to return proper cigar...	commit \| commitdiff \| tree \| snapshot
2006-10-06	jprocter	Added filter so that input to a JPred job is *solely...	commit \| commitdiff \| tree \| snapshot
2006-10-06	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2006-10-06	jprocter	new getVisibleContigs method mirrors the getVisibleCont...	commit \| commitdiff \| tree \| snapshot
2006-10-06	amwaterhouse	AAFrequency optimized	commit \| commitdiff \| tree \| snapshot
2006-10-06	amwaterhouse	Set consensus as hashtble[]	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	Multiple Views	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	BatchSize now 10	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	OutOfMemoryError test	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	TabbedPanes for views	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	lower case available	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	AlignFrame must take width and height	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	Sequenceset may be empty, multiple views	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	DEFAULT_WIDTH	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	Viewname, sequencesetid, gatheredViews	commit \| commitdiff \| tree \| snapshot
2006-10-05	amwaterhouse	Sequences are optionalcvs diff vamsas.xsd	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	Check annotation is editable	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	Send DAS requests in batches of 20	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	DB seqs may be lower or upper case	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	BoldFont upperCase	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	Remove empty() from feature ToolTip	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	Check selection scroll beyond aligmnment height	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	Check on vscrollMax values	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	upperCaseBold	commit \| commitdiff \| tree \| snapshot
2006-10-03	amwaterhouse	TurnColour bug on popupmenu applet	commit \| commitdiff \| tree \| snapshot
2006-09-27	jprocter	fixed tree building exception when one residue or a...	commit \| commitdiff \| tree \| snapshot
2006-09-18	amwaterhouse	Draw hidden column marker correctly	commit \| commitdiff \| tree \| snapshot
2006-09-18	amwaterhouse	click node to select sequences	commit \| commitdiff \| tree \| snapshot
2006-09-15	amwaterhouse	Simplified schema	commit \| commitdiff \| tree \| snapshot
2006-09-15	amwaterhouse	Simplified layout	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	hideSequence hide all before recalc consensus	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	Copy consensus	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	2.1.1 bug fix	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	2.1.1 bug fix	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	Add copy consensus sequence	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	Allow alt for group editing	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	For now ignore middle mouse font resize on Mac applet	commit \| commitdiff \| tree \| snapshot
2006-09-12	amwaterhouse	Allow alt button for Mac applet group editing	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	Comment out lower case colouring for bug fix release	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	Remove system.outs	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	get idWidth should use italic font when getting size	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	Error message if file not found moved for headless...	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	visWidth allows borders to be drawn around offscreen...	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	Remove system.out	commit \| commitdiff \| tree \| snapshot
2006-09-11	amwaterhouse	getVisibleIdWidth() for making images	commit \| commitdiff \| tree \| snapshot
2006-09-07	jprocter	added copy consensus sequence to consensus annotation...	commit \| commitdiff \| tree \| snapshot
2006-09-05	jprocter	getVisibleContigs() returns start and end positions...	commit \| commitdiff \| tree \| snapshot
2006-09-05	jprocter	javadoc on contigs	commit \| commitdiff \| tree \| snapshot
2006-09-01	amwaterhouse	Dont look for middle mouse on the Mac	commit \| commitdiff \| tree \| snapshot
2006-09-01	amwaterhouse	MAC moved to viewport	commit \| commitdiff \| tree \| snapshot
2006-09-01	amwaterhouse	feature settings	commit \| commitdiff \| tree \| snapshot
2006-09-01	amwaterhouse	Feature Settings	commit \| commitdiff \| tree \| snapshot
2006-08-30	amwaterhouse	GraphHeight might be zero	commit \| commitdiff \| tree \| snapshot
2006-08-30	amwaterhouse	jnet file is 1 to 1 mapping	commit \| commitdiff \| tree \| snapshot
2006-08-30	amwaterhouse	Remove unnecessary separotor	commit \| commitdiff \| tree \| snapshot
2006-08-30	amwaterhouse	Gap added to aa3Hash	commit \| commitdiff \| tree \| snapshot
2006-08-30	amwaterhouse	User colours are case sensitive	commit \| commitdiff \| tree \| snapshot
2006-08-29	amwaterhouse	Can shrink graph to zero	commit \| commitdiff \| tree \| snapshot
2006-08-29	amwaterhouse	No stacktrace	commit \| commitdiff \| tree \| snapshot
2006-08-29	amwaterhouse	createMapping alreadyMapped	commit \| commitdiff \| tree \| snapshot
2006-08-29	amwaterhouse	Additional repaint	commit \| commitdiff \| tree \| snapshot
2006-08-29	amwaterhouse	jnetfile can be loaded onto alignment	commit \| commitdiff \| tree \| snapshot
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