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jalview.git
2016-06-20 Jim ProcterJAL-2110 pass dataset to makeCDSalignment commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2110 catch case when updateDBRef argument has null... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2110 List now used for AlignCodonFrame references commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2110 copy alcodonframes only if copy constructor... commit | commitdiff | tree | snapshot
2016-06-19 Jim ProcterJAL-2110 distinct alignedcodonframe entries for tests commit | commitdiff | tree | snapshot
2016-06-19 Jim ProcterJAL-2110 test alcodonframes must be distinct commit | commitdiff | tree | snapshot
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview... commit | commitdiff | tree | snapshot
2016-06-16 Jim ProcterJAL-2110 todo - select mappings involving sequences... commit | commitdiff | tree | snapshot
2016-06-16 Jim ProcterJAL-2110 change test for desired behaviour of getCodonF... commit | commitdiff | tree | snapshot
2016-06-16 Jim ProcterJAL-2110 equals and hashcode should check fromSeq commit | commitdiff | tree | snapshot
2016-06-16 Jim ProcterJAL-2110 throw implementation error if not given a... commit | commitdiff | tree | snapshot
2016-06-16 Jim ProcterJAL-2110 typo caused infinite loop commit | commitdiff | tree | snapshot
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD... commit | commitdiff | tree | snapshot
2016-06-15 gmungocJAL-2025 unit tests added commit | commitdiff | tree | snapshot
2016-06-15 gmungocJAL-2101 unit test updated to match config file commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuJAL-2102 right justify 'Mass' in uniprot FTS, and ... commit | commitdiff | tree | snapshot
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures commit | commitdiff | tree | snapshot
2016-06-14 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD... commit | commitdiff | tree | snapshot
2016-06-14 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-14 gmungocJAL-2110 fixes to dbref resolution and mappings, use... commit | commitdiff | tree | snapshot
2016-06-14 gmungocJAL-2110 ensure "UniProtKB/Swiss-Prot" dbrefs canonical... commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuJAL-2047 trapped block that could likely cause ClassCas... commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... commit | commitdiff | tree | snapshot
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added commit | commitdiff | tree | snapshot
2016-06-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterMerge branch 'r291_docs' into develop commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterJAL-2089 docs for June 10th commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterJAL-2089 signed off bug release notes commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test... commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterJAL-2089 documenting for 8th june RC1 commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterJAL-1941 added test URL and notes about PyRNA restclient commit | commitdiff | tree | snapshot
2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group commit | commitdiff | tree | snapshot
2016-06-09 gmungocJAL-2110 work in progress commit | commitdiff | tree | snapshot
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... commit | commitdiff | tree | snapshot
2016-06-09 gmungocJAL-2114 corrected Javadoc commit | commitdiff | tree | snapshot
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... commit | commitdiff | tree | snapshot
2016-06-06 tcofoegbuJAL-1919, JAL-1960 fix to disable refetching dbrefs... commit | commitdiff | tree | snapshot
2016-06-06 tcofoegbuJAL-1944 bugfix for wrong alignment numbering when... commit | commitdiff | tree | snapshot
2016-06-03 gmungocJAL-2110 random stuff commit | commitdiff | tree | snapshot
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-02 tcofoegbuJAL-2020 fix for Jmol choking jalview while loading... commit | commitdiff | tree | snapshot
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... commit | commitdiff | tree | snapshot
2016-06-02 gmungocJAL-2124 additional Spanish text strings commit | commitdiff | tree | snapshot
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense... commit | commitdiff | tree | snapshot
2016-06-02 gmungocJAL-1424 corrected typos in message text keys commit | commitdiff | tree | snapshot
2016-06-02 gmungocJAL-1424 removed duplicate entry and unneeded full... commit | commitdiff | tree | snapshot
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures... commit | commitdiff | tree | snapshot
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping commit | commitdiff | tree | snapshot
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures... commit | commitdiff | tree | snapshot
2016-06-01 Jim ProcterMerge branch 'testfix/JAL-2038' into develop commit | commitdiff | tree | snapshot
2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher commit | commitdiff | tree | snapshot
2016-06-01 Jim ProcterJAL-2038 ensure bare Strings are lowercased before... commit | commitdiff | tree | snapshot
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation commit | commitdiff | tree | snapshot
2016-06-01 gmungocJAL-1424 clearer messaging commit | commitdiff | tree | snapshot
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used... commit | commitdiff | tree | snapshot
2016-06-01 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop commit | commitdiff | tree | snapshot
2016-06-01 Jim Procterfix build commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their... commit | commitdiff | tree | snapshot
2016-05-31 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-31 tcofoegbuJAL-1563 minor user doc update commit | commitdiff | tree | snapshot
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... commit | commitdiff | tree | snapshot
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame... commit | commitdiff | tree | snapshot
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version... commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterMerge branch 'features/JAL-2113_emblXml1.2' into develop commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2 commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop commit | commitdiff | tree | snapshot
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... commit | commitdiff | tree | snapshot
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label... commit | commitdiff | tree | snapshot
2016-05-30 tcofoegbuJAL-2038 fix to enable case-insensitive file name ... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-2077 release notes commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-2089 update release date for 2.9.1 commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example... commit | commitdiff | tree | snapshot
2016-05-30 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match... commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-2119 help links checker added to /utils commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin... commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-2119 updated Valdar group link commit | commitdiff | tree | snapshot
2016-05-29 gmungocJAL-2119 fixes for broken links in help files commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each... commit | commitdiff | tree | snapshot
2016-05-27 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification... commit | commitdiff | tree | snapshot
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1911 correct typo in field name commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text... commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere... commit | commitdiff | tree | snapshot
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