jalview.git
2016-06-20 Jim ProcterJAL-2110 pass dataset to makeCDSalignment
2016-06-20 Jim ProcterJAL-2110 catch case when updateDBRef argument has null...
2016-06-20 Jim ProcterJAL-2110 List now used for AlignCodonFrame references
2016-06-20 Jim ProcterJAL-2110 copy alcodonframes only if copy constructor...
2016-06-19 Jim ProcterJAL-2110 distinct alignedcodonframe entries for tests
2016-06-19 Jim ProcterJAL-2110 test alcodonframes must be distinct
2016-06-19 Jim ProcterJAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
2016-06-16 Jim ProcterJAL-2110 todo - select mappings involving sequences...
2016-06-16 Jim ProcterJAL-2110 change test for desired behaviour of getCodonF...
2016-06-16 Jim ProcterJAL-2110 equals and hashcode should check fromSeq
2016-06-16 Jim ProcterJAL-2110 throw implementation error if not given a...
2016-06-16 Jim ProcterJAL-2110 typo caused infinite loop
2016-06-15 Jim ProcterMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-15 gmungocJAL-2025 unit tests added
2016-06-15 gmungocJAL-2101 unit test updated to match config file
2016-06-14 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-14 tcofoegbuJAL-2102 right justify 'Mass' in uniprot FTS, and ...
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures
2016-06-14 gmungocMerge branch 'develop' into features/JAL-2110_crossRefD...
2016-06-14 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-06-14 gmungocJAL-2110 fixes to dbref resolution and mappings, use...
2016-06-14 gmungocJAL-2110 ensure "UniProtKB/Swiss-Prot" dbrefs canonical...
2016-06-14 tcofoegbuJAL-2047 trapped block that could likely cause ClassCas...
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column...
2016-06-14 gmungocJAL-1686 JAL-2110 equals and/or hashCode method added
2016-06-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem...
2016-06-10 Jim ProcterMerge branch 'r291_docs' into develop
2016-06-10 Jim ProcterJAL-2089 docs for June 10th
2016-06-10 Jim ProcterJAL-2089 signed off bug release notes
2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test...
2016-06-10 Jim ProcterJAL-2089 documenting for 8th june RC1
2016-06-10 Jim ProcterJAL-1941 added test URL and notes about PyRNA restclient
2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group
2016-06-09 gmungocJAL-2110 work in progress
2016-06-09 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-09 gmungocJAL-2114 corrected Javadoc
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output...
2016-06-06 tcofoegbuJAL-1919, JAL-1960 fix to disable refetching dbrefs...
2016-06-06 tcofoegbuJAL-1944 bugfix for wrong alignment numbering when...
2016-06-03 gmungocJAL-2110 random stuff
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-02 tcofoegbuJAL-2020 fix for Jmol choking jalview while loading...
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-02 gmungocJAL-2124 additional Spanish text strings
2016-06-02 gmungocMerge branch 'develop' into features/JAL-2110_makeSense...
2016-06-02 gmungocJAL-1424 corrected typos in message text keys
2016-06-02 gmungocJAL-1424 removed duplicate entry and unneeded full...
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures...
2016-06-02 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping
2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures...
2016-06-01 Jim ProcterMerge branch 'testfix/JAL-2038' into develop
2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher
2016-06-01 Jim ProcterJAL-2038 ensure bare Strings are lowercased before...
2016-06-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation
2016-06-01 gmungocJAL-1424 clearer messaging
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used...
2016-06-01 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-06-01 Jim Procterfix build
2016-05-31 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc
2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their...
2016-05-31 tcofoegbumerge
2016-05-31 tcofoegbuJAL-1563 minor user doc update
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced...
2016-05-31 gmungocJAL-2023 adjustments to mappings added for split frame...
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version...
2016-05-31 Jim ProcterMerge branch 'features/JAL-2113_emblXml1.2' into develop
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections...
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label...
2016-05-30 tcofoegbuJAL-2038 fix to enable case-insensitive file name ...
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin...
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to...
2016-05-30 Jim ProcterJAL-2077 release notes
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD...
2016-05-30 Jim ProcterJAL-1551 formatting
2016-05-30 Jim ProcterJAL-2089 update release date for 2.9.1
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example...
2016-05-30 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match...
2016-05-30 gmungocJAL-2119 help links checker added to /utils
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin...
2016-05-30 gmungocJAL-2119 updated Valdar group link
2016-05-29 gmungocJAL-2119 fixes for broken links in help files
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection...
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to...
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each...
2016-05-27 tcofoegbumerge
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification...
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save...
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed...
2016-05-27 gmungocJAL-1911 correct typo in field name
2016-05-26 tcofoegbumerge
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text...
2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere...
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