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jalview.git
2024-08-15 Jim ProcterJAL-1551 spotless commit | commitdiff | tree | snapshot
2024-07-26 Jim ProcterMerge branch 'feature/JAL-4386_JAL-4435_trees_from_anno... commit | commitdiff | tree | snapshot
2024-07-26 Jim ProcterMerge branch 'jims/JAL-4386_from_renia' into spike... spike/JAL-4386_generate_multiple_leaves_for_ss_sources commit | commitdiff | tree | snapshot
2024-07-26 Jim ProcterJAL-4386 i8n secondary structure score model jims/JAL-4386_from_renia commit | commitdiff | tree | snapshot
2024-07-25 Jim ProcterJAL-4386 fix viewstyle autotests commit | commitdiff | tree | snapshot
2024-07-25 Jim ProcterJAL-4441 new menu option to show or hide structure... commit | commitdiff | tree | snapshot
2024-07-25 Jim ProcterJAL-4386 TODOs re standardising and more efficient... commit | commitdiff | tree | snapshot
2024-07-25 Jim ProcterMerge branch 'develop' into feature/JAL-4386_calculate_... commit | commitdiff | tree | snapshot
2024-07-25 Jim ProcterJAL-4392 JAL-3987 store and restore consensus secondary... commit | commitdiff | tree | snapshot
2024-07-25 Renia CorreyaJAL-4392 Fix compilation error in test commit | commitdiff | tree | snapshot
2024-07-25 Renia CorreyaJAL-4392 Secondary Structure Consensus save and load... commit | commitdiff | tree | snapshot
2024-07-25 Renia CorreyaJAL-4392 Print annotations commit | commitdiff | tree | snapshot
2024-07-24 Renia CorreyaJAL-4392 Adding secondary structure provider Adding... commit | commitdiff | tree | snapshot
2024-07-24 Jim ProcterJAL-3063 added a brief description of how to update... commit | commitdiff | tree | snapshot
2024-07-17 Renia CorreyaJAL-4392 Updated the label "Show auto calculated annota... commit | commitdiff | tree | snapshot
2024-07-12 Renia CorreyaJAL-4392 Implemented show/hide group consensus secondar... commit | commitdiff | tree | snapshot
2024-07-12 Renia CorreyaJAL-4411 Bug fix commit | commitdiff | tree | snapshot
2024-07-08 Jim ProcterJAL-4392 check if we are rendering a ss-consensus logo... spike/JAL-4386_develop_trial_merge commit | commitdiff | tree | snapshot
2024-07-08 Jim ProcterJAL-4440 defensive checks for Jmol/Jalview binding... commit | commitdiff | tree | snapshot
2024-07-04 Jim ProcterMerge branch 'develop' into spike/JAL-4386_develop_tria... commit | commitdiff | tree | snapshot
2024-07-04 Jim ProcterMerge branch 'feature/JAL-4386_calculate_tree_using_sec... commit | commitdiff | tree | snapshot
2024-07-04 Renia CorreyaJAL-4392 Updated the colouring of consensus logo commit | commitdiff | tree | snapshot
2024-07-03 Jim ProcterJAL-3631 rebuild getdown jars after merge to develop commit | commitdiff | tree | snapshot
2024-07-03 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-07-03 Renia CorreyaJAL-4392 Code refactoring commit | commitdiff | tree | snapshot
2024-07-03 Renia CorreyaJAL-4436 Code refactoring commit | commitdiff | tree | snapshot
2024-07-03 Renia CorreyaJAL-4392 Code Refactoring commit | commitdiff | tree | snapshot
2024-07-03 Renia CorreyaJAL-4436 Implementation of add colour by secondary... commit | commitdiff | tree | snapshot
2024-07-02 Jim ProcterJAL-4435 WIP - to squash commit | commitdiff | tree | snapshot
2024-07-01 Ben SoaresJAL-3631 Slightly larger wizard commit | commitdiff | tree | snapshot
2024-07-01 Ben SoaresJAL-3631 Harden defence against looping getdown relaunc... commit | commitdiff | tree | snapshot
2024-06-29 Ben SoaresJAL-3631 JVL file with appbase now relaunches getdown commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Made an isAdmin flag to work in Windows Admin... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3830 Added some quotation marks to jalview.bat... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Remove the checkboxes from the Finish screen... commit | commitdiff | tree | snapshot
2024-06-28 Jim ProcterJAL-4386 annotate internal nodes either side of partiti... commit | commitdiff | tree | snapshot
2024-06-28 Jim ProcterJAL-4386 move provider label into a new attribute on... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Change in user path for locally installed... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Change to Windows user-space default location... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Fixed a getdown Exception when launching Jalvi... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Adjustments to the Windows installer commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 spelling correction commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 Installers with separate actions for user... commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 Add property to let log4j know we're not runni... commit | commitdiff | tree | snapshot
2024-06-27 Jim ProcterJAL-4386 account for null entries in sequence array... commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 Log4j logging to .jalview.log file when reques... commit | commitdiff | tree | snapshot
2024-06-27 Jim ProcterMerge branch 'feature/JAL-4386_calculate_tree_using_sec... commit | commitdiff | tree | snapshot
2024-06-27 Jim ProcterJAL-4386 allow score models to generate additional... commit | commitdiff | tree | snapshot
2024-06-27 Jim ProcterJAL-4386 JAL-4411 factored out the test for a particula... commit | commitdiff | tree | snapshot
2024-06-27 Jim ProcterJAL-4411 catch cases when 'ssStructFilePathNameInPDB... commit | commitdiff | tree | snapshot
2024-06-27 Jim ProcterJAL-4411 handle Boolean from String when Jalview projec... commit | commitdiff | tree | snapshot
2024-06-27 Renia CorreyaJAL-4411 Fixed some test cases commit | commitdiff | tree | snapshot
2024-06-27 Renia CorreyaJAL-4411 Record source metadata in derived/transferred... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 JAL-3384 Install4j launch now redirects STDOUT... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Use the icon file passed by install4j if a... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Allow icon file name to be passed to launcher... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Forgot to add this file for 'Change parity... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Tests for version comparisons and Jar version... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Change parity of comparison for convention commit | commitdiff | tree | snapshot
2024-06-24 Ben SoaresJAL-3631 Report getCanonicalPath for installer appdir commit | commitdiff | tree | snapshot
2024-06-24 Ben SoaresJAL-3631 Check Implementation-Version of getdown-launch... commit | commitdiff | tree | snapshot
2024-06-21 Ben SoaresJAL-3631 updated getdown jars commit | commitdiff | tree | snapshot
2024-06-21 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv... commit | commitdiff | tree | snapshot
2024-06-21 Ben SoaresJAL-3631 Changed label for consistency commit | commitdiff | tree | snapshot
2024-06-21 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche... commit | commitdiff | tree | snapshot
2024-06-21 Ben SoaresMerge branch 'improvement/JAL-4409_implement_extra_sche... commit | commitdiff | tree | snapshot
2024-06-21 Ben SoaresJAL-4409 Add two empty args to getdown call from instal... commit | commitdiff | tree | snapshot
2024-06-21 Ben SoaresJAL-4409 Don't merge JVL configs when changing appbase improvement/JAL-4409_implement_extra_schemes_in_getdown commit | commitdiff | tree | snapshot
2024-06-20 Ben SoaresJAL-4409 Use fixed 'latest' artifact URL commit | commitdiff | tree | snapshot
2024-06-20 Ben SoaresJAL-4409 Changes in BUILD channel appbase to tie in... commit | commitdiff | tree | snapshot
2024-06-20 Ben SoaresJAL-3631 Now sending launcher.appdir from within getdown commit | commitdiff | tree | snapshot
2024-06-19 Ben SoaresJAL-3631 Rename/rationalise informational system proper... commit | commitdiff | tree | snapshot
2024-06-18 Ben SoaresJAL-3631 macos dev install script incorporated into... commit | commitdiff | tree | snapshot
2024-06-18 Ben SoaresJAL-4358 slight improvement to detecting desktop creati... commit | commitdiff | tree | snapshot
2024-06-18 Ben SoaresJAL-3631 gradle-build-and-re-install script, works... commit | commitdiff | tree | snapshot
2024-06-18 Ben SoaresJAL-3631 Substantial additions to Getdown (through... commit | commitdiff | tree | snapshot
2024-06-18 Renia CorreyaJAl-4392 Hide secondary structure consensus with no... commit | commitdiff | tree | snapshot
2024-06-17 Ben SoaresJAL-3631 Allow quick deployment of gradle build on... commit | commitdiff | tree | snapshot
2024-06-14 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv... commit | commitdiff | tree | snapshot
2024-06-14 Ben SoaresJAL-3631 Got rid of the USER_EXECUTABLE_NAME as it... commit | commitdiff | tree | snapshot
2024-06-14 Ben SoaresJAL-3631 Removed old non-user launcher. Labelled USERSP... commit | commitdiff | tree | snapshot
2024-06-14 Ben SoaresJAL-3631 JAL-4104 More consistent system property names... commit | commitdiff | tree | snapshot
2024-06-14 Ben SoaresJAL-3631 Allow -Pinstall4j_build_ids=MACOS-AARCH64... commit | commitdiff | tree | snapshot
2024-06-13 Ben SoaresJAL-3845 Add a popup error message, with instructions... commit | commitdiff | tree | snapshot
2024-06-13 Ben SoaresJAL-3631 New Installer icons. Getdown check that the... commit | commitdiff | tree | snapshot
2024-06-12 Ben SoaresJAL-3631 Name changes to system properties and a fallba... commit | commitdiff | tree | snapshot
2024-06-12 Ben SoaresJAL-3631 Spot system property triggers in getdown to... commit | commitdiff | tree | snapshot
2024-06-12 Ben SoaresJAL-3631 Add a new launcher in install4j to pass new... commit | commitdiff | tree | snapshot
2024-06-12 Renia CorreyaJAL-4392 Fixed failed test cases commit | commitdiff | tree | snapshot
2024-06-12 Renia CorreyaJAL-4392 Feature implementation of group consensus... commit | commitdiff | tree | snapshot
2024-06-12 Renia CorreyaJAL-4426 Fix when multiple secondary structure annotati... commit | commitdiff | tree | snapshot
2024-06-10 Ben SoaresMerge branch 'bug/JAL-4421_customise_volume_name_of_DMG... commit | commitdiff | tree | snapshot
2024-06-10 Jim ProcterJAL-4159 remove errant jalview source .zip commit | commitdiff | tree | snapshot
2024-06-07 Renia CorreyaJAL-4426 Defect fix to display number of sequences... commit | commitdiff | tree | snapshot
2024-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem... commit | commitdiff | tree | snapshot
2024-06-07 Ben SoaresJAL-4421 Update the dev_masos_installer.sh to use new... bug/JAL-4421_customise_volume_name_of_DMG_installers commit | commitdiff | tree | snapshot
2024-06-06 Ben SoaresJAL-4420 Added some more filename extensions commit | commitdiff | tree | snapshot
2024-06-06 Ben SoaresJAL-4072 Add zip-slip check in getdown commit | commitdiff | tree | snapshot
2024-06-06 Jim ProcterMerge branch 'bug/JAL-4421_customise_volume_name_of_DMG... commit | commitdiff | tree | snapshot
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