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jalview.git
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag commit | commitdiff | tree | snapshot
2013-10-16 Jim ProcterMerge branch 'JAL-1395' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-10-16 Jim ProcterJAL-1395 do not calculate non-gap consensus when no... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterMerge branch 'JAL-1292_regression' into Release_2_8_1_B... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1114 javadoc commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable field... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1114 API javadoc commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1354 watch for exceptions when initialising (Securi... commit | commitdiff | tree | snapshot
2013-10-11 Jim ProcterJAL-1354 ensure resource bundles are copied into Jalvie... commit | commitdiff | tree | snapshot
2013-10-08 Jim Procterreindexed Jmol jar with 'jar -i' to fix JAL-1389 commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2... commit | commitdiff | tree | snapshot
2013-10-08 Jim Procterlocalisation for JAL-1384 and JAL-1388 commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterMerge branch 'JAL-643_JAL-1384' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterJAL-1384 JAL-1388 revised popup menu documentation... commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu commit | commitdiff | tree | snapshot
2013-10-08 Jim Procterfix for JAL-1387 commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for... commit | commitdiff | tree | snapshot
2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl... commit | commitdiff | tree | snapshot
2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController commit | commitdiff | tree | snapshot
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings... commit | commitdiff | tree | snapshot
2013-10-07 Jim ProcterJAL-1385 expose core view model methods in interface commit | commitdiff | tree | snapshot
2013-10-07 Jim ProcterJAL-1385 Alignment view controller logic implementation... commit | commitdiff | tree | snapshot
2013-10-05 Jim ProcterMerge branch 'JAL-1378_jb2.1cli' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-10-05 Jim ProcterJAL-1379 graceful degradation to legacy service when... commit | commitdiff | tree | snapshot
2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore... commit | commitdiff | tree | snapshot
2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary... commit | commitdiff | tree | snapshot
2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto... commit | commitdiff | tree | snapshot
2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries... commit | commitdiff | tree | snapshot
2013-10-04 Jim ProcterJAL-1383 - disable startup of the Envision2 workflow... commit | commitdiff | tree | snapshot
2013-10-04 Jim ProcterJAL-940 JAL-1378 EOL comment on JWS v1 services commit | commitdiff | tree | snapshot
2013-10-04 Jim Procterupdate JABA client dependency in InstallAnywhere build commit | commitdiff | tree | snapshot
2013-10-04 Jim ProcterMerge branch 'RNAalifold' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-10-04 Jim Procterfix for JAL-1380 and efficiency todo for JAL-1381 commit | commitdiff | tree | snapshot
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA... commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1365 test that RNAAliFold service settings are... commit | commitdiff | tree | snapshot
2013-09-25 Jim Procterformatting commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold... commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metad... commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and... commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous... commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1270 nominal jalview version string for projects... commit | commitdiff | tree | snapshot
2013-09-25 Jim ProcterJAL-1270 Desktop.instance is null during headless jalvi... commit | commitdiff | tree | snapshot
2013-09-20 Jim Procterformatting commit | commitdiff | tree | snapshot
2013-09-18 Jim ProcterJAL-1355 - fix compilation errors: typos and missing... commit | commitdiff | tree | snapshot
2013-09-13 Jim Proctertweak - v is lowercase in Jalview commit | commitdiff | tree | snapshot
2013-09-13 darolmari18n how to commit | commitdiff | tree | snapshot
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold commit | commitdiff | tree | snapshot
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-09-03 Jim ProcterJAL-1373 tweak precision calculation so alignments... commit | commitdiff | tree | snapshot
2013-09-03 Jim ProcterJAL-920 compute a consensus for single sequence commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1373 JAL-520 wrap tooltips for columns in annotatio... commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1373 generate percentages with appropriate precision commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus renderi... commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1358 monday morning commits :( commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1358 jabaws not jaba commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1358 update jabaws client for installanywhere commit | commitdiff | tree | snapshot
2013-09-02 Jim ProcterJAL-1358 remove old v2 jaba min-client commit | commitdiff | tree | snapshot
2013-08-31 Daniel BartonBrief html documentation entry for RNAalifold under... commit | commitdiff | tree | snapshot
2013-08-30 Daniel BartonColour be RNA helices bug fixed commit | commitdiff | tree | snapshot
2013-08-30 Daniel BartonJAL-1358 Cleaned up RNAalifoldClient.java. RNA helices... commit | commitdiff | tree | snapshot
2013-08-30 darolmari18n date/time handling commit | commitdiff | tree | snapshot
2013-08-29 darolmari18n commit | commitdiff | tree | snapshot
2013-08-28 Daniel BartonRNAalifoldClient updated to be more like AAConClient... commit | commitdiff | tree | snapshot
2013-08-27 Daniel BartonJAL-1358 jalview displays some RNA struture annotation... commit | commitdiff | tree | snapshot
2013-08-27 Jim ProcterMerge branch 'JAL-1359_patch' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-08-27 Jim ProcterJAL-1359 simpler logic for deciding if all threads... commit | commitdiff | tree | snapshot
2013-08-27 Daniel BartonMerge remote-tracking branch 'origin/Release_2_8_1_Bran... commit | commitdiff | tree | snapshot
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord... commit | commitdiff | tree | snapshot
2013-08-27 Jim ProcterMerge branch 'JAL-1332_regression' into Release_2_8_1_B... commit | commitdiff | tree | snapshot
2013-08-27 Jim ProcterJAL-1332 regression from 7ce72ca7fadf35a249427ecb836b22... commit | commitdiff | tree | snapshot
2013-08-27 Jim ProcterJAL-1332 - defer SSM provision to root provider for... commit | commitdiff | tree | snapshot
2013-08-27 Daniel BartonJAL-1358 Just the eclipse project/classpath files so... commit | commitdiff | tree | snapshot
2013-08-22 Daniel BartonJalview builds sucessfully and runs from eclipse commit | commitdiff | tree | snapshot
2013-08-20 Jim ProcterMerge branch 'JAL-1353-bugdemo' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-08-20 Jim ProcterJAL-1353 test demonstrating the freeze with minimal... commit | commitdiff | tree | snapshot
2013-08-14 Jim ProcterJAL-1354 i18n bundle for Spanish commit | commitdiff | tree | snapshot
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs... commit | commitdiff | tree | snapshot
2013-07-12 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-07-12 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2013-07-12 Jim ProcterJAL-1347 RNA Structure consensus follows the alignment... commit | commitdiff | tree | snapshot
2013-07-12 Jim ProcterJAL-1347 flow control for display of profile data is... commit | commitdiff | tree | snapshot
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2013-07-11 Jim ProcterJAL-1347 identify and set rendering settings for consen... commit | commitdiff | tree | snapshot
2013-07-11 Jim ProcterJAL-1347 refactor logic for setting display flags for... commit | commitdiff | tree | snapshot
2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to... commit | commitdiff | tree | snapshot
2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into Release_2_8_1_Branch commit | commitdiff | tree | snapshot
2013-07-09 Jim ProcterJAL-895 - patch example files with correct Fe positions commit | commitdiff | tree | snapshot
2013-07-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2013-07-08 Jim Proctermake sure 'example alignment' can be found in documentation commit | commitdiff | tree | snapshot
2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for chemapps.stolaf.edu... commit | commitdiff | tree | snapshot
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