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jalview.git
2024-08-19 Jim ProcterJAL-789 limit applicable score models to substitution... commit | commitdiff | tree | snapshot
2024-08-19 Jim ProcterJAL-4446 allow progress bar to become indeterminate... commit | commitdiff | tree | snapshot
2024-08-19 Jim ProcterMerge branch 'develop' into feature/JAL-4446_cancellabl... commit | commitdiff | tree | snapshot
2024-08-13 Ben SoaresJAL-4111 Remove unnecessary dependency on gradle-imagem... commit | commitdiff | tree | snapshot
2024-08-07 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-08-07 Jim ProcterJAL-4447 standardised title formula for reporting score... commit | commitdiff | tree | snapshot
2024-08-07 Jim ProcterJAL-4446 reuse lasteta value commit | commitdiff | tree | snapshot
2024-08-07 Jim ProcterJAL-4159 JAL-789 report pasimap and pairwise alignment... commit | commitdiff | tree | snapshot
2024-08-07 Jim ProcterJAL-4159 suppress pairwise alignment display options... commit | commitdiff | tree | snapshot
2024-08-07 Jim ProcterJAL-4446 better reporting of ETA estimation - particula... commit | commitdiff | tree | snapshot
2024-08-06 Ben SoaresJAL-3631 Made bespoke command line arguments for consol... commit | commitdiff | tree | snapshot
2024-08-06 Ben SoaresJAL-3631 Added install4j installer command line options... commit | commitdiff | tree | snapshot
2024-08-06 Ben SoaresJAL-3631 Important change to Execution Level in Windows... commit | commitdiff | tree | snapshot
2024-08-06 Ben SoaresJAL-3631 Short sleep added to 100% progress on installe... commit | commitdiff | tree | snapshot
2024-08-06 Ben SoaresJAL-3631 An attempt to add a Reset to defaults button... commit | commitdiff | tree | snapshot
2024-08-06 Jim ProcterJAL-4446 avoid NPE when progress bar message is null commit | commitdiff | tree | snapshot
2024-08-06 Ben SoaresJAL-3631 Some small but important changes to run_other_... commit | commitdiff | tree | snapshot
2024-08-05 Ben SoaresJAL-3631 JAL-4444 Change way we add the jalview_x and... commit | commitdiff | tree | snapshot
2024-08-05 Ben SoaresJAL-3631 Icons for installer wizard title bar commit | commitdiff | tree | snapshot
2024-08-05 Ben SoaresJAL-3631 update.ps1 has fixed Readlink-f function,... commit | commitdiff | tree | snapshot
2024-08-05 Ben SoaresJAL-3631 Revert the Jalview installer icon back to... commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-1551 source formatting and header commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-4446 .. missing methods for cancellable pasimap commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-4446 cancellable Pasimap - still need to make the... commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-4446 calculate and report PaSiMap ETA in progress bar commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-4446 allow progress bar message to be changed whils... commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-1551 apply GPLv3 for source files commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks commit | commitdiff | tree | snapshot
2024-08-05 Ben SoaresJAL-3631 Adjustment to wizard size (was too big in... commit | commitdiff | tree | snapshot
2024-08-05 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-08-02 Ben SoaresJAL-3631 made Readlink-f work in powershell. Need... commit | commitdiff | tree | snapshot
2024-08-02 Jim ProcterJAL-4418 release note for JAL-3063 doc/jalview-projects.md commit | commitdiff | tree | snapshot
2024-08-02 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-08-02 Ben SoaresJAL-3631 update.sh script fixed to work in Windows... commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresJAL-3631 Administrator mode label on all screens of... commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresJAL-3631 Added a test for a specified update and a... commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv... commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresJAL-3631 Small change to update.sh. update.ps1 NOT... commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresJAL-3631 Remove a debug echo commit | commitdiff | tree | snapshot
2024-08-01 Jim ProcterJAL-4445 - increase the fileglob expected counts commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresJAL-3631 Convert both CLASSPATHS in update.sh commit | commitdiff | tree | snapshot
2024-08-01 Ben SoaresJAL-3631 Separated jalview.sh and update.sh, and includ... commit | commitdiff | tree | snapshot
2024-08-01 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-07-31 Ben SoaresJAL-3631 Changes to bash launcher to allow headless... commit | commitdiff | tree | snapshot
2024-07-31 Ben SoaresJAL-3631 Add a (by-passable) confirmation and improved... commit | commitdiff | tree | snapshot
2024-07-31 Ben SoaresJAL-3631 Changes to Getdown to call getdown-launcher... commit | commitdiff | tree | snapshot
2024-07-31 Ben SoaresJAL-3631 Correction to a comment in build.gradle commit | commitdiff | tree | snapshot
2024-07-29 Ben SoaresJAL-3631 Add --updateuser and --updateinstallation... commit | commitdiff | tree | snapshot
2024-07-29 Ben SoaresJAL-3631 Small corrections commit | commitdiff | tree | snapshot
2024-07-29 Ben SoaresJAL-3631 Getdown acknowledges in output when only perfo... commit | commitdiff | tree | snapshot
2024-07-29 Ben SoaresJAL-3631 Ensure the DMG default vmoptions.txt has the... commit | commitdiff | tree | snapshot
2024-07-29 Ben SoaresJAL-3631 Add PID to console info - only available in... commit | commitdiff | tree | snapshot
2024-07-29 Jim ProcterJAL-4443 patch out pasimap in GUI for JalviewJS and... commit | commitdiff | tree | snapshot
2024-07-26 Ben SoaresJAL-3631 Added an --update option to the jalview.sh... commit | commitdiff | tree | snapshot
2024-07-26 Jim ProcterJAL-4418 updated release notes and release date to... commit | commitdiff | tree | snapshot
2024-07-26 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-07-26 Jim ProcterMerge branch 'patch/JAL-4428_osx_codesigning_scripts... commit | commitdiff | tree | snapshot
2024-07-26 Ben SoaresJAL-3631 Added verbose and quiet options, and matched... commit | commitdiff | tree | snapshot
2024-07-26 Ben SoaresJAL-3631 Some minor bugfixes to the install4j installer... commit | commitdiff | tree | snapshot
2024-07-25 Ben SoaresJAL-3631 Comprehensive install shell script for macos commit | commitdiff | tree | snapshot
2024-07-25 Ben SoaresJAL-3631 minor changes - spelling and comment spacing... commit | commitdiff | tree | snapshot
2024-07-24 Jim ProcterJAL-3063 added a brief description of how to update... commit | commitdiff | tree | snapshot
2024-07-24 Ben SoaresJAL-3631 Correct some text to add the file separator... commit | commitdiff | tree | snapshot
2024-07-23 Ben SoaresJAL-3631 Consolidated repeated code (mainly form verifi... commit | commitdiff | tree | snapshot
2024-07-22 Ben SoaresJAL-3631 Minor fixes to the advanced options scripts commit | commitdiff | tree | snapshot
2024-07-22 Ben SoaresJAL-3631 Made both Advanced options into a group. ... commit | commitdiff | tree | snapshot
2024-07-21 Ben SoaresJAL-3631 Improved tooltip on advanced options. Ensure... commit | commitdiff | tree | snapshot
2024-07-20 Ben SoaresJAL-3631 Group/box and simplify visibility of advanced... commit | commitdiff | tree | snapshot
2024-07-20 Ben SoaresJAL-3631 Consistently and correctly enable/diable/hide... commit | commitdiff | tree | snapshot
2024-07-19 Ben SoaresJAL-3631 Customise the user-space path in the install4j... commit | commitdiff | tree | snapshot
2024-07-18 Ben SoaresJAL-3631 Tweaks to getdown for updating and user appdir... commit | commitdiff | tree | snapshot
2024-07-18 Ben SoaresJAL-3631 Allow override of appDataPath with property... commit | commitdiff | tree | snapshot
2024-07-17 Ben SoaresJAL-3631 Extensive working of options in install4j... commit | commitdiff | tree | snapshot
2024-07-12 Jim Proctershorter hashes - just first seven characters.. like... commit | commitdiff | tree | snapshot
2024-07-12 Jim ProcterJAL-3631 updated getdown jars commit | commitdiff | tree | snapshot
2024-07-12 Jim ProcterJAL-3631 - report that an additional flag might be... commit | commitdiff | tree | snapshot
2024-07-12 Jim ProcterJAL-3631 shorter digest string for the unique user... commit | commitdiff | tree | snapshot
2024-07-12 Jim ProcterJAL-3631 check we actually created EnvConfig! commit | commitdiff | tree | snapshot
2024-07-12 Jim ProcterJAL-3631 updated getdown jars commit | commitdiff | tree | snapshot
2024-07-12 Jim ProcterJAL-3631 insert digest of full path to installer.appdir... commit | commitdiff | tree | snapshot
2024-07-03 Jim ProcterJAL-3631 rebuild getdown jars after merge to develop commit | commitdiff | tree | snapshot
2024-07-03 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr... commit | commitdiff | tree | snapshot
2024-07-01 Ben SoaresJAL-3631 Slightly larger wizard commit | commitdiff | tree | snapshot
2024-07-01 Ben SoaresJAL-3631 Harden defence against looping getdown relaunc... commit | commitdiff | tree | snapshot
2024-06-29 Ben SoaresJAL-3631 JVL file with appbase now relaunches getdown commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Made an isAdmin flag to work in Windows Admin... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3830 Added some quotation marks to jalview.bat... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Remove the checkboxes from the Finish screen... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Change in user path for locally installed... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Change to Windows user-space default location... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Fixed a getdown Exception when launching Jalvi... commit | commitdiff | tree | snapshot
2024-06-28 Ben SoaresJAL-3631 Adjustments to the Windows installer commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 spelling correction commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 Installers with separate actions for user... commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 Add property to let log4j know we're not runni... commit | commitdiff | tree | snapshot
2024-06-27 Ben SoaresJAL-3631 Log4j logging to .jalview.log file when reques... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 JAL-3384 Install4j launch now redirects STDOUT... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Use the icon file passed by install4j if a... commit | commitdiff | tree | snapshot
2024-06-25 Ben SoaresJAL-3631 Allow icon file name to be passed to launcher... commit | commitdiff | tree | snapshot
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