jalview.git
2016-05-10 Jim ProcterJAL-2103 extracted result processing code to allow...
2016-05-10 Jim ProcterJAL-2103 reinstate legacy behaviour (when full_MSA...
2016-05-10 Jim ProcterJAL-2103 proof of concept - patch to retrieve full...
2016-05-10 Jim ProcterJAL-1551 formatting
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature...
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly
2016-05-06 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-05-06 Jim ProcterJAL-192 fix javadoc
2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables
2016-05-06 Jim ProcterJAL-1551 formatting
2016-05-06 Jim ProcterJAL-192 JAL-2099 reuse refactored scale code for wrappe...
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin...
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin...
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin...
2016-05-06 Jim ProcterJAL-2100 centre triangles on hidden column vertical...
2016-05-06 Jim ProcterJAL-2100 optimisation
2016-05-06 Jim ProcterJAL-2100 triangles shown below in jvdesktop unwrapped...
2016-05-06 Jim ProcterJAL-192 patch off-by-one for pathological gap case
2016-05-05 gmungocJAL-2068 better documentation in example script
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case...
2016-05-04 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar
2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness"
2016-05-04 gmungocJAL-2092 hide columns with/without feature
2016-05-04 gmungocJAL-2074 corrected classpathentry for Groovy 2.4.6
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
2016-05-04 tcofoegbumerge
2016-05-04 tcofoegbuJAL-1563 JAL-2091 Added total result count to Uniprot...
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs...
2016-05-03 Jim ProcterMerge branch 'r291_docs' into develop
2016-05-03 tcofoegbuJAL-2091 disable pagination buttons during initialisation
2016-05-03 tcofoegbuJAL-1563 JAL-2091 Added generic pagination for FTS...
2016-05-02 tcofoegbuJAL-1563 Fixed Uniprot FTS result-set count error,...
2016-05-02 Jim ProcterJAL-1270 move some Network tests to External (require...
2016-05-02 Jim ProcterJAL-1270 capitalise test groups
2016-05-02 Jim ProcterJAL-2089 JAL-1551 formatting
2016-05-02 Jim ProcterJAL-2089 release 2.9.1 entry in release notes
2016-04-29 tcofoegbumerge
2016-04-29 tcofoegbuJAL-1563 house keeping/updated API doc for new method... merge/JAL-1563_uniprot-free-text-search
2016-04-29 tcofoegbuJAL-1563 Further increased swing timer for search textf...
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated...
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-29 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for...
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when...
2016-04-29 Jim ProcterJAL-192 scale origin relative to start of reference...
2016-04-29 Jim ProcterJAL-966 JAL-1553
 todo: remove UI components from Colum...
2016-04-29 Jim ProcterJAL-1551 formatting

2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque...
2016-04-29 Jim ProcterJAL-1551 formatting
2016-04-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-28 tcofoegbuJAL-1563 increased swing timer for search action from...
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy
2016-04-28 tcofoegbuJAL-1563 fixed failing tests for FTS Rest Client core
2016-04-28 tcofoegbuJAL-1563 Increased default response size to 500, and...
2016-04-28 tcofoegbuJAL-1563 Implemented hack to make table both scrollable...
2016-04-27 tcofoegbuJAL-1563 Added Id (Uniprot Id) to the dynamic column...
2016-04-27 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no...
2016-04-27 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue...
2016-04-27 tcofoegbuJAL-1563 Added fix to prevent swing timer from reinitia...
2016-04-27 Jim ProcterJAL-1366 JAL-2086 reinstate bolding of reference sequence
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
2016-04-27 tcofoegbuJAL-1563 further modificaiton of the uniprot data colum...
2016-04-27 tcofoegbuJAL-1563 Modified Uniprot data column configurations...
2016-04-27 tcofoegbure-enabled new uniprot sequence fetcher on spike branch
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge
2016-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-04-26 Jim ProcterJAL-2079 update GPL header for new Xfam tests
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment
2016-04-26 Jim ProcterJAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
2016-04-26 Jim ProcterJAL-2079 disable RFAM(Full) source until we can retriev...
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources
2016-04-26 tcofoegbumerge
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature
2016-04-26 tcofoegbuJAL-1563 reverted to old uniprot fetcher to enable...
2016-04-26 Jim ProcterJAL-2077 reinstate JAL-1554 fix for left-then-right...
2016-04-26 Jim ProcterJAL-2077 reinstate annotation label popup by handling...
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look...
2016-04-26 Jim ProcterMerge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4 groovy/JAL-2074_upgradeto2.4.4
2016-04-26 Jim ProcterMerge branch 'bug/JAL-2080_javaws_slow_291' into develop
2016-04-26 Jim ProcterJAL-2080 removed all 'Class-Path' references in libs
2016-04-26 Jim ProcterJAL-2080 removed classpath references to Xerces and...
2016-04-26 Jim ProcterJAL-2080 mark jalview.jar as main jar resource
2016-04-26 tcofoegbumerge
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS...
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-26 tcofoegbuJAL-2071 changed extension for data column config files
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-26 tcofoegbuJAL-2071 resolved fts data column config file path...
2016-04-26 tcofoegbuJAL-2071 House keeping
2016-04-26 tcofoegbuJAL-2074 removed hard-coded groovy lib path in classpath
2016-04-26 tcofoegbuJAL-2071 improvement to reduce webservice requests...
2016-04-26 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-04-25 Jim ProcterJAL-2074 disable security manager at start up re: lopic...
2016-04-25 Jim ProcterJAL-2074 removed xerces to explore wierdness
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy
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